Query= MSMg01no486_p18.b1 MSMg01no486_p18.b1 CHROMAT_FILE:
MSMg01no486_p18.b1 PHD_FILE: MSMg01no486_p18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:27 2005
(684 letters)
>mm_chr1_162497005_162498087
Length = 1083
Score = 1237 bits (640), Expect = 0.0
Identities = 673/684 (98%), Gaps = 4/684 (0%)
Strand = Plus / Minus
Query: 1 tctccagtcttcctaccttttccatagcaagcaaagtatagtgttttaagagaaaactag 60
|||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 828 tctctagtcctcctaccttttccatagcaaggaaagtatagtgttttaagagaaaactag 769
Query: 61 agattgcttgtagagatgacttgagtaaaattgtattttctgtttttccctgtatatacc 120
||||||||||||||||||| |||||||||||| |||||||||||||||||||| ||||||
Sbjct: 768 agattgcttgtagagatgagttgagtaaaattatattttctgtttttccctgtttatacc 709
Query: 121 cactaggttgcttgctaataaggagcccagtctagtttgtgacactctgctctgttgtta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cactaggttgcttgctaataaggagcccagtctagtttgtgacactctgctctgttgtta 649
Query: 181 tccctgggaattgatctttaaattcaaattcccatccctcccacctaacttaccttcttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tccctgggaattgatctttaaattcaaattcccatccctcccacctaacttaccttcttt 589
Query: 241 ttcccctttttcattttttgctttttatttttatagaaatgttgcttcagaaggaaactc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 ttcccctttttcattttttgctttttatttttatagaaatgttgcttcagaaggaaactc 529
Query: 301 tggggtattttaaatagaggatagagaataaattatatagagtctcctcacctgatagaa 360
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tggggtatttt-aatagaggatagagaataaattatatagagtctcctcacctgatagaa 470
Query: 361 ttaggtgacaaaatagccactgattatgggttccttttgttctactcctatgaatctgga 420
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttaggtgagaaaatagccactgattatgggttccttttgttctactcctatgaatctgga 410
Query: 421 gttttgaaatgtggggattttcagatgtagctatttatatcttaaacattttcatcttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gttttgaaatgtggggattttcagatgtagctatttatatcttaaacattttcatcttat 350
Query: 481 agcatattcttcatgaaaatctttataaataaaattttatccatatgtagtagttttgta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 agcatattcttcatgaaaatctttataaataaaattttatccatatgtagtagttttgta 290
Query: 541 attttaaaagaggaatactaagtcagattgtgattattttccattttgctaattttttcc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 attttaaaagaggaatactaagtcagattgtgattattttccattttgctaattttttcc 230
Query: 601 caaaaagactgaatttgtttaatcctcagacaaaaacaac-aacaacaacaacaacaaaa 659
|||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct: 229 caaaaagactgaatttgtttaatcctcagacaaaaa-aaccaacaacaacaacaacaaaa 171
Query: 660 aaacaaaacaaaaaacaaaaacaa 683
||| ||||||||||||||||||||
Sbjct: 170 aaa-aaaacaaaaaacaaaaacaa 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 684
Length of database: 1083
Length adjustment: 10
Effective length of query: 674
Effective length of database: 1073
Effective search space: 723202
Effective search space used: 723202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no486_p18.g1 MSMg01no486_p18.g1 CHROMAT_FILE:
MSMg01no486_p18.g1 PHD_FILE: MSMg01no486_p18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:27 2005
(647 letters)
>mm_chr1_162377518_162378564
Length = 1047
Score = 1236 bits (639), Expect = 0.0
Identities = 645/647 (99%)
Strand = Plus / Plus
Query: 1 ttgcactgcttaacctactcaatgtcacaagctattgccaaagcccctgacagttttcta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcactgcttaacctactcaatgtcacaagctattgccaaagcccctgacagttttcta 260
Query: 61 agcacagaagaatctaattttaaaagactacttagatattatactcttgaaaattcagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcacagaagaatctaattttaaaagactacttagatattatactcttgaaaattcagaa 320
Query: 121 ctttacatttgaatatacttttcattttctcatctctctggggtaaaggactgtgggtga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttacatttgaatatacttttcattttctcatctctctggggtaaaggactgtgggtga 380
Query: 181 gggaagggcagcaatccacaaagcagcagacaatgattaatatgcaggtgcaaggatgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggaagggcagcaatccacaaagcagcagacaatgattaatatgcaggtgcaaggatgac 440
Query: 241 tgcagaaaaaagcagcagcagcagcttatgtaactgataaagtattagtcagcaggaccc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcagaaaaaagcagcagcagcagcttatgtaactgataaagtattagtcagcaggaccc 500
Query: 301 taataacacctccctggaccctgaggcagtgtagctgatcaatactttagaatagcctat 360
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 taataacacctccctggaccctgaggcggtgtagctgatcaatactttagaatagcctat 560
Query: 361 tgtcttctattggcttagacaacagagaaaaataatacaggaaaaaacctttctgtattc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgtcttctattggcttagacaacagagaaaaataatacaggaaaaaacctttctgtattc 620
Query: 421 aaagtagctgacagattgaaaggtgaacaacatatattgattaatttcacaagataatat 480
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaagtagctgacaggttgaaaggtgaacaacatatattgattaatttcacaagataatat 680
Query: 481 aaattacaaattaggatatatattttattagtatgatgctgaatatcagttaatcttttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aaattacaaattaggatatatattttattagtatgatgctgaatatcagttaatcttttc 740
Query: 541 ttaaggaccctgacagcatttctgtttttcatgctatttctaaaatacatagcaacaact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttaaggaccctgacagcatttctgtttttcatgctatttctaaaatacatagcaacaact 800
Query: 601 acataattcaattaatttagagtacaagagacattaacgatatgtgt 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acataattcaattaatttagagtacaagagacattaacgatatgtgt 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
