BAC Information

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BAC

Clone NameMSMg01-487A15
Chromosome1 (Build37)
Map Location 179,748,903 - 179,920,363
singlet/doubletdoublet
Overlap geneEG631584
Upstream geneSdccag8, LOC666235, Akt3, Zfp238, EG631449, LOC100040770, 1700016C15Rik, Adss
Downstream geneEG545391, LOC666262, 5830417C01Rik, LOC666284, 4930527J03Rik, LOC666295, B230369F24Rik, LOC669454, 2310005N03Rik, Hnrpu, Efcab2, D230039L06Rik, Kif26b, Smyd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487A15.T7 (MSMg01no487_a15.b1)MSMg01-487A15.TJ (MSMg01no487_a15.g1)
ACCAG566098AG566099
length764709
length of high quality
(start - end)		692 (73 - 764)319 (78 - 396)
definitionCHROMAT_FILE: MSMg01no487_a15.b1 PHD_FILE: MSMg01no487_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:31 2005CHROMAT_FILE: MSMg01no487_a15.g1 PHD_FILE: MSMg01no487_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:09:32 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(179,919,991 - 179,920,363)(179,748,903 - 179,749,221)
sequence
CTCTAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATCTCTGTACAGACTGTCTTGGAATGTGTTAATCCCAACGATGGG
AGGAGAAAAACCACCCACCCAAATCAACACAATCAATTAAAGAAGGCAAC
GAATTAAACAAATTTTTTATTTGTATACATTGCCTCCCCCAATCCACAGT
CGTGTTCGAGAGGTCAGTGTTGGACATTATAGAGCTCGGGTAAGGGGACA
TCATAGAGCTCGGGTAAGGGGGCTACTGAATGGGGGGGGGGTCTGGTGAA
CAAAACAGGTGGCCTTCCTCGATTGAGAAAATAAGCATAACAAGTAATAA
TTTAGTCCTAAGGACCTCCGGGAACAAAGACGTGGTTCTAAGGTGGGTGG
AATCGGGTAGTCAGAGGGTTGTGAGACAGTTGGGTTTTGAAACAAAGACA
TGGTTGTTTCCTGGAACATACAGTACAGAACCATTTGAAGTTAAGGTTAC
AGGTGGGGCCTAGACCTGTCTTTGAGAAGCACAGGTGTAACCATAAACAG
GAATGAACTTACTTTGTCTTTAACTATAAGATGACTTCAAGAGGCTGGTG
AGATGACACAATGGTTACAATCACAGCAACTATCTATAACGGGATCTGGC
GCTCTCTTCTGGCATGAAGGTATTCGAGCAGAGCAGAGCACTCCTGTTTC
CCCCATTAAAAAGAACAGAAAAATCATTGACTTACTTCATTATCACAACT
GTGATTCTCCATCA

TTCCCCATTGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTACCCCCTGGATGTTCCCC
CTATTTCATGCCTAAGCCATAGGCCATGAGATTTATTACTGACAGGTGTT
ACTTGTGAGCTTTTAAAAATACATTTCAAATTGAGATGGATACATCAGAT
TTCAAGGAGTTATTTAAAAGAATGTAAAAATACCTTGCTGATCATTATTT
TACAGCAATTACATTTGGGGTTGAATATATTATGAAAGTGAATTTTATCC
TTCTTTGTGATTTCTTGATTACGTTTAATGAATTACATGTACACAGTGGC
TTATGTCATATTTCTTGTCCACAATTCCTCTCGAGATGGGTGAGTTATGT
TGAAAATTAGTTATCCCTTGATAATGAATAATTTTAAAATGGGTCTTGAA
CAAGGGCTTTTAAAAATTTTATTTTTTCCCGGGGGCAAAAAAAAAAAAAA
AAAGGGGGTTTTTAAAAAACCCCCCCCCTTTGGGGGGTTTCTTAAAACCT
CTTCGGCGGGGGTTTTCTTTCCTTGAAAAAAAAAAATCTCCCCCCCCCCT
CTTTTTTATTTCCCCCCCGGGGGGTGGGGTGTTTTTTTTTCTCCCCTCTT
CTCAATATTAATCTTTTTATTCCCCATTTTTTTATTTCCAGACCCCTATT
TTCCGTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_a15.b1 MSMg01no487_a15.b1 CHROMAT_FILE:
MSMg01no487_a15.b1 PHD_FILE: MSMg01no487_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:31 2005
         (692 letters)



>mm_chr1_179919272_179920363
          Length = 1092

 Score =  706 bits (365), Expect = 0.0
 Identities = 371/373 (99%)
 Strand = Plus / Minus

                                                                        
Query: 320  ggtgggtggaatcgggtagtcagagggttgtgagacagttgggttttgaaacaaagacat 379
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 ggtgggtggaatcgggtagtcagagggttgtgagacagttgggttttgaaacaaagacat 1033

                                                                        
Query: 380  ggttgtttcctggaacatacagtacagaaccatttgaagttaaggttacaggtggggcct 439
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 ggttgtttcctggaacatacagtacagaaccatttgaagttaaggttacaggtggggcct 973

                                                                        
Query: 440  agacctgtctttgagaagcacaggtgtaaccataaacaggaatgaacttactttgtcttt 499
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  agacctgtctttgagaagcacaggtgtaaccataaacaggaatgaacttactttgtcttt 913

                                                                        
Query: 500  aactataagatgacttcaagaggctggtgagatgacacaatggttacaatcacagcaact 559
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  aactataagatgacttcaagaggctggtgagatgacacaatggttacaatcacagcaact 853

                                                                        
Query: 560  atctataacgggatctggcgctctcttctggcatgaaggtattcgagcagagcagagcac 619
            |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 852  atctataacgggatctggcgctctcttctggcatgaaggtatgctagcagagcagagcac 793

                                                                        
Query: 620  tcctgtttcccccattaaaaagaacagaaaaatcattgacttacttcattatcacaactg 679
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792  tcctgtttcccccattaaaaagaacagaaaaatcattgacttacttcattatcacaactg 733

                         
Query: 680  tgattctccatca 692
            |||||||||||||
Sbjct: 732  tgattctccatca 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1092
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1082
Effective search space:   737924
Effective search space used:   737924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no487_a15.g1 MSMg01no487_a15.g1 CHROMAT_FILE:
MSMg01no487_a15.g1 PHD_FILE: MSMg01no487_a15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:32 2005
         (319 letters)



>mm_chr1_179748703_179749421
          Length = 719

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttctaccccctggatgttccccctatttcatgcctaagccataggccatgagatttatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttctaccccctggatgttccccctatttcatgcctaagccataggccatgagatttatt 260

                                                                       
Query: 61  actgacaggtgttacttgtgagcttttaaaaatacatttcaaattgagatggatacatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actgacaggtgttacttgtgagcttttaaaaatacatttcaaattgagatggatacatca 320

                                                                       
Query: 121 gatttcaaggagttatttaaaagaatgtaaaaataccttgctgatcattattttacagca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gatttcaaggagttatttaaaagaatgtaaaaataccttgctgatcattattttacagca 380

                                                                       
Query: 181 attacatttggggttgaatatattatgaaagtgaattttatccttctttgtgatttcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attacatttggggttgaatatattatgaaagtgaattttatccttctttgtgatttcttg 440

                                                                       
Query: 241 attacgtttaatgaattacatgtacacagtggcttatgtcatatttcttgtccacaattc 300
           |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acaacgtttaatgaattacatgtacacagtggcttatgtcatatttcttgtccacaattc 500

                              
Query: 301 ctctcgagatgggtgagtt 319
           |||||||||||||||||||
Sbjct: 501 ctctcgagatgggtgagtt 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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