Query= MSMg01no487_d10.b1 MSMg01no487_d10.b1 CHROMAT_FILE:
MSMg01no487_d10.b1 PHD_FILE: MSMg01no487_d10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:45 2005
(401 letters)
>mm_chr1_181453321_181454121
Length = 801
Score = 694 bits (359), Expect = 0.0
Identities = 396/419 (94%), Gaps = 18/419 (4%)
Strand = Plus / Plus
Query: 1 atttgagagttggggagatggctcaggtgataaaatgcctgccaagtaagcgtgaagact 60
||||||||| |||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct: 183 atttgagagctggggagatgtctcagatgataaaatgcttgccaagtaagcgtgaagact 242
Query: 61 tgagttcagattcccaatacccaaccaaaaagagccaggcacagttacacaggccaatgt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 tgagttcagattcccaatacccaaccaaaaagagccaggcacagttacacaggccaatgt 302
Query: 121 tggggaggaagaagctggtagatccccacccccc-acccccaaataagatggggaaatat 179
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 303 tggggaggaagaagctggtagatccccacccccccacccccaaataagatggggaaatat 362
Query: 180 tgaggcagatacccacattgatctct-----------------agcctgcacacaaacac 222
|||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 363 tgaggcagatacccacattgatctcttacccacattgatctctagcctgcacacaaacac 422
Query: 223 acactcaagtatacatatctatgtgcacatgtgtgcacaaacacataagatatgtaggta 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 acactcaagtatacatatctatgtgcacatgtgtgcacaaacacataagatatgtaggta 482
Query: 283 aaaatatgcaaaaattaatgcttccttgcccatctccgtcattcgcacttgctcgctttt 342
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 483 aaaatatgcaaaaattaatgcttccttgcccatctccgtcattctcacttgctcgctttt 542
Query: 343 aacgacctggtgggaatcactggagcatgggatgattaaacctcagttcccataaaccc 401
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 aacgacctggtgggaatcactggagcatgggatgattaaacctcagttcccataaaccc 601
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 801
Length adjustment: 9
Effective length of query: 392
Effective length of database: 792
Effective search space: 310464
Effective search space used: 310464
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_d10.g1 MSMg01no487_d10.g1 CHROMAT_FILE:
MSMg01no487_d10.g1 PHD_FILE: MSMg01no487_d10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:45 2005
(676 letters)
>mm_chr1_181642879_181643954
Length = 1076
Score = 988 bits (511), Expect = 0.0
Identities = 553/567 (97%)
Strand = Plus / Minus
Query: 1 aattcccaggaaccgagtattggctcacaaccatctttaggggaatctgatgccctcttc 60
||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct: 890 aattcccaggaactgagtgttggctcacaaccatctttaggggaatttgatgccctcttc 831
Query: 61 aggcaggcggatgtatatgcagcagagaactcatattaaataaattaaaaaaaaaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 830 aggcaggcggatgtatatgcagcagagaactcatattaaataaattaaaaaaaaataata 771
Query: 121 aaacaagcaaacaaacaaaccaaagtgactcgaccttgagaaatcccagcttggagatca 180
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct: 770 aaacaagcaaacaaacaaaccaaagtgactcgaccttgagaaatcctagcttggagatga 711
Query: 181 gtgtaaggtctcctttgttacaagaaacaaagccttgggctttcccacggagtaggcgca 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 710 gtgtaaggtctcctttgttacaagaaacaaagccttgggctttcccatggagtaggcgca 651
Query: 241 cccatgagaacacatttccaggcttcccatgccaactggctgacctcaggcatcgactgc 300
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 650 cccatgagaacacatttccaggtttcccatgccaactggctgacctcaggcatccactgc 591
Query: 301 aacaaagcgctgcctgagttagaggagatgcagacggtggcccacacctggccttgttgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 590 aacaaagcgctgcctgagttagaggagatgcagacggtggcccacacctggccctgttgg 531
Query: 361 tcacaagtgctgggtgttgacctgtgtgtggcatcgaagtcccactattacaaacccaga 420
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 530 tcacaagtgctgggtgttgacctgtgtgtggcatcgaagtcccattattacaaacccaga 471
Query: 421 catgaaacacgaaaaatggtggaaggcaaatctgttttttctgaacctctggctggatgg 480
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 catgaaacatgaaaaatggtggaaggcaaatctgttttttctgaacctctggctggatga 411
Query: 481 gaagtccttgtgtggatagatggtcacgtgcctgcacacatgaaaaggagaaagagtgac 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 410 gaagtccttgtgtggatagatggtcacgtgcctgcacacatgaaaaggagaaagagggac 351
Query: 541 ctctgagctccatgctccccacgaact 567
|||||||||||||||||||||||||||
Sbjct: 350 ctctgagctccatgctccccacgaact 324
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1076
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1066
Effective search space: 709956
Effective search space used: 709956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
