Query= MSMg01no487_d18.b1 MSMg01no487_d18.b1 CHROMAT_FILE:
MSMg01no487_d18.b1 PHD_FILE: MSMg01no487_d18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:47 2005
(664 letters)
>mm_chr1_33834435_33835499
Length = 1065
Score = 1226 bits (634), Expect = 0.0
Identities = 657/668 (98%), Gaps = 9/668 (1%)
Strand = Plus / Plus
Query: 5 gaattcttttgcaatcc-gagtaatgcttttttcagctatagcaacaggtccagcatttt 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttgcaa-cctgagtaatgcttttttcagctatagcaacaggtccagcatttt 263
Query: 64 gacaacgaaccctaatttggattaaaaaaaaaaaaaaa-gcataagttttctctgcttta 122
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 264 gacaacgaaccctaatttggattaaaaaaaaaaaaaaaagcataagttttctctgcttta 323
Query: 123 tataacaagaattttaaaataacaatataaataagtactaaaagatcttttcaataacac 182
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatgacaagaattttaaaataacaatataaataagtactaaaagatcttttcaataacac 383
Query: 183 actctatcatcttaaagtacttttatagtacccccattttatttttctcatccacataca 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 actctatcatcttaaagtacttttatagtacccccattttatttttctcatccacataca 443
Query: 243 agaattaaagtagaattagaagattcaaaatataaaggcacacttctgaaaacatcaatc 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agaattaaagtagaattagaagattcaaaatataaaggcacacttctgaaaacatcaatc 503
Query: 303 agtgtcaaatttgttgatatagaggccttgaagcaaattagattcacaagtaaatgacca 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agtgtcaaatttgttgatatagaggccttgaagcaaattagattcacaagtaaatgacca 563
Query: 363 ctataaacttctagataatatcccactttaaaaaaaaagaataatttattttatgtatat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ctataaacttctagataatatcccactttaaaaaaaaagaataatttattttatgtatat 623
Query: 423 gagtacgctatagctgtcttctgacacatcagaaaaggaaatcaaatcccattacagatg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 gagtacgctatagctgtcttctgacacatcagaaaaggaaatcaaatcccattacagatg 683
Query: 483 gttgtgagccaccatgtggttgctgggaattgaactcaggacctctttccagcccaatat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gttgtgagccaccatgtggttgctgggaattgaactcaggacctctttccagcccaatat 743
Query: 543 tcaactttttgttgctgttttctgacttcattttacgttttttttttt------gattaa 596
|||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 744 tcaactttttgttgctgttttctgacttcatttttcgtttttttttttttttttgattaa 803
Query: 597 cttatttaactgtatttatttatttagcaagtatgggtgttttgtctgcatatctgtata 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cttatttaactgtatttatttatttagcaagtatgggtgttttgtctgcatatctgtata 863
Query: 657 cttcttgt 664
||||||||
Sbjct: 864 cttcttgt 871
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 50
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1065
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1055
Effective search space: 689970
Effective search space used: 689970
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_d18.g1 MSMg01no487_d18.g1 CHROMAT_FILE:
MSMg01no487_d18.g1 PHD_FILE: MSMg01no487_d18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:09:47 2005
(220 letters)
>mm_chr1_33999638_34000257
Length = 620
Score = 412 bits (213), Expect = e-120
Identities = 216/217 (99%)
Strand = Plus / Minus
Query: 1 ttcagttcaaactgccactctgttcccttccaaatatttctccatagaacatttctttca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 417 ttcagttcaaactgccactctgttcccttccaaatatttctccatagaacatttctttca 358
Query: 61 cctcaaaggttttccgtgttctccccatatcttcttccattcctcttctaagccttacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cctcaaaggttttccgtgttctccccatatcttcttccattcctcttctaagccttacaa 298
Query: 121 acgctacttgatgccacaaggcagcagagtagagaattctcttacatgtgaggacagagg 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 acactacttgatgccacaaggcagcagagtagagaattctcttacatgtgaggacagagg 238
Query: 181 ggggagggggaaatggaatgatggttgatcttgattg 217
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 ggggagggggaaatggaatgatggttgatcttgattg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 620
Length adjustment: 9
Effective length of query: 211
Effective length of database: 611
Effective search space: 128921
Effective search space used: 128921
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
