TTTTAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCAGGGTTGTTCCGATTTGCATTTCCCTGATGATTAAGTATG
TTGAACATTTTTTCAGGTGCTTCTCAGGCATTTACTATTCCTCAGGTGAG
AAATTTTTGTTTAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTTATTT
TCTGGAGTCCACCTTCTTGAGTTCTTTATGCCATTTGTGTATTTACCGCT
TTTACTTTTGGTAACCATGGAGAGCATAAGTCCACTTGAGTTAAGAATTT
TTCTAACATCTGTTTTTTTTTTTTTTTGTTTTTTTTGTTTTGTTTTGTTT
TGTTCTTTAAACCTGGTGTATATAGAAGTCCCCTGCTCCATTGTGCTGTC
AGCCCCAGGTGAAATTGGTTTTACGCAAACACCATTTTAGCCTAGCTCTA
TCCCTTTAGTGTACCACTTGAAACAACAGCCTCCAAAAAATAAACTTTAT
AACTAGTGCTAGCATTAATGTTGTTCATTGTTTATTATGTAGGCTATTGC
AACTTTTTCTGTTTCCTGTGGGGCTCCACCCAAGACAGCATTTCTCAGTG
TGTCCCTCCATTTTTAGGCCCTACATTGGTGCCACATGTAGTGGTACAGT
GGCCATGGAAAACTGGGTTATCTGAATGGGGGACTGGAAATGAAAAAAGA
TTGGTGTGCGAAAAGGGTGAAGCCAAGACAAAATTTCTGATCAA

NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAACTCTTCAGCTGGGGAACGGT
GGTAATAAAGTGTTCCCGCAACACAGACTGTTGAGAAGGATTCAACTGCA
TGAATTCAGAACTCTTCAGCTGGGGAACAGGGGTACCAGTGAGTACAGCT
TTACAAGGTAAGTCTGGTCTTGAACTTTCTAACGAAATTCAAGACAGTCT
ATCAGAAGTAAAGTGGGAAATAGCTTTACAAGGTACGCCTGGCCTTGAAC
TTTCTAACGAAATTCAATATTGTCTATCAGAAGTAAAGTGGGAAATAGCT
TTACAAGGTATGTTTGGCCTTGAACTTTTTCTAGTGTTAGGAGCCCTTTT
GTTCTTTTTCACATGTTATCAAGTGATTAAGGTAGGGCTGAAAATTCTGG
ATGAAATTCAGGGCAATCTATCAGAAGTAAAGCGGGGAGAGAGAGTAGGA
GCAAAGAGGAAATATGGTACACAAACTAAGTATACAGGCCTTTCCAAGGG
TCTTGAACCAGAGGAAAAGTTAAGGTCAGGTAAGAATACCTGGGGAGAGA
TTAGAAGGAAGGAAAAGAAAAAAGAAAAGAAAAAAGATCAATTAGCGGAG
GTCTCTAGGAGAAGGAGCCTATACTCGTCACTAGATGAGCTCAAGGAGCC
AGCTCTTGGTAGCTCTGAATCAGATGACGAATTCTCCTCTGAAGAAAAG

Query= MSMg01no487_j11.b1 MSMg01no487_j11.b1 CHROMAT_FILE:
MSMg01no487_j11.b1 PHD_FILE: MSMg01no487_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:14 2005
         (688 letters)



>mm_chr1_3218424_3219511
          Length = 1088

 Score = 1060 bits (548), Expect = 0.0
 Identities = 576/588 (97%), Gaps = 7/588 (1%)
 Strand = Plus / Minus

                                                                        
Query: 108  tagctctgagccccattttttaatggggttattttattttctggagtccaccttcttgag 167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1088 tagctctgagccccattttttaatggggttattttattttctggagtccaccttcttgag 1029

                                                                        
Query: 168  ttctttatgccatttgtgtatttaccgcttttacttttggtaaccatggagagcataagt 227
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1028 ttctttatgccatttgtgtatttaccgcttttacttttggtaaccatggagagcataagt 969

                                                                        
Query: 228  ccacttgagttaagaatttttctaacatct-gttttttttttttttt--gtttt----tt 280
            | |||||||||||||||||||||||||||| ||||||||||||||||  |||||    ||
Sbjct: 968  ctacttgagttaagaatttttctaacatctggttttttttttttttttggtttttttgtt 909

                                                                        
Query: 281  ttgttttgttttgttttgttctttaaacctggtgtatatagaagtcccctgctccattgt 340
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 908  ttgttttgttttgttttgttctttaaacctggtgtatatagaagtcccctgctccattgt 849

                                                                        
Query: 341  gctgtcagccccaggtgaaattggttttacgcaaacaccattttagcctagctctatccc 400
            ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 848  gctgtcagccccaggtgaaattggttttaggtaaacaccattttagcctagctctatccc 789

                                                                        
Query: 401  tttagtgtaccacttgaaacaacagcctccaaaaaataaactttataactagtgctagca 460
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788  tttagtgtaccacttgaaacaacagcctccaaaaaataaactttataactagtgctagca 729

                                                                        
Query: 461  ttaatgttgttcattgtttattatgtaggctattgcaactttttctgtttcctgtggggc 520
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728  ttaatgttgttcattgtttattatgtaggctattgcaactttttctgtttcctgtggggc 669

                                                                        
Query: 521  tccacccaagacagcatttctcagtgtgtccctccatttttaggccctacattggtgcca 580
            |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 668  tccacccaagacagcatttctcagtgtgtccctccatttttaagccctacattggtgcca 609

                                                                        
Query: 581  catgtagtggtacagtggccatggaaaactgggttatctgaatgggggactggaaatgaa 640
            |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 608  catgtagtggtacagtggccatggaaaactggattatctgaatgggggactggaaatgaa 549

                                                            
Query: 641  aaaagattggtgtgcgaaaagggtgaagccaagacaaaatttctgatc 688
            ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548  aaaagattggtgtgcgaaaagggtgaagccaagacaaaatttctgatc 501


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)