Query= MSMg01no487_l01.b1 MSMg01no487_l01.b1 CHROMAT_FILE:
MSMg01no487_l01.b1 PHD_FILE: MSMg01no487_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:22 2005
(470 letters)
>mm_chr1_170084396_170085262
Length = 867
Score = 832 bits (430), Expect = 0.0
Identities = 458/468 (97%), Gaps = 5/468 (1%)
Strand = Plus / Minus
Query: 4 gaattcttctcttt-ttccctgctcttaaaaatacaaaaaaaaagagaaagttttgtttt 62
|||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct: 667 gaattcttctctttatt-cctgctcttaaaaatac--aaaaaaagagaaagttttgtttt 611
Query: 63 gtgttcttttttggttttgtttatttggggggggggtgctccttttccgctgttgggttt 122
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 610 gtgttcttttttggttttgtttattt-gagggggggtgctccttttccgctgttgggttt 552
Query: 123 gtgggtcttgctgggtttattcttacgtatgtatacagggtgatgtgaaaagaggaacct 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 551 gtgggtcttgctgggtttattcttacgtatgtatacagggtgatgtgaaaagaggtacct 492
Query: 183 gggagagaaggctgcttccatgccctgctttgcttcagtccatgtcaaaaccatcgagaa 242
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 491 gggagagaaggctgcttccatgctctgctttgcttcagtccatgtcaaaaccatcgagaa 432
Query: 243 agctcatggcctcatgtccctgctttcttgcatgccctgtgtgtgtggcactctggtagt 302
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct: 431 agctcatggcctcatgtccctgctttcttgcatgcccggggtgtgtggcactctggtagt 372
Query: 303 ccctgagataacaagacagggacttccttccttaaatactcatcttttcttatattgaaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccctgagataacaagacagggacttccttccttaaatactcatcttttcttatattgaaa 312
Query: 363 agaaaggcttttgttgattctgattgtcccaaccaagggttttctttctccctgattaac 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 agaaaggcttttgttgattctgattgtcccaaccaagggttttctttctccctgattaac 252
Query: 423 ttcaacagtccacaagtatgcttccaacaagacaggatctttctccag 470
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ttcaacagtccacaagtatgcttccaacaagacaggatctttctccag 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 867
Length adjustment: 10
Effective length of query: 460
Effective length of database: 857
Effective search space: 394220
Effective search space used: 394220
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no487_l01.g1 MSMg01no487_l01.g1 CHROMAT_FILE:
MSMg01no487_l01.g1 PHD_FILE: MSMg01no487_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:22 2005
(652 letters)
>mm_chr1_169914749_169915799
Length = 1051
Score = 973 bits (503), Expect = 0.0
Identities = 516/521 (99%), Gaps = 3/521 (0%)
Strand = Plus / Plus
Query: 134 atctccagttacttctattttctagcagatgacataattttattctttttttgcaaaata 193
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 atctccagttacttctattttctagcagatgacataattttattctttttttgcaaaata 391
Query: 194 atcctatctctctct--ttctctctctctttctatcttccatgattttatgtataatgat 251
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 atcctatctctctctctttctctctctctttctatcttccatgattttatgtataatgat 451
Query: 252 ttttcttcatctattcattgattgataaacacctaactgattcaataactaggcaaatgt 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttttcttcatctattcattgattgataaacacctaactgattcaataactaggcaaatgt 511
Query: 312 caatattgtcaaaaataaacatggaaaggctgtaggcatctctgtagtagatgacttatg 371
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 caatattgttaaaaataaacatggaaaggctgtaggcatctctgtagtagatgacttatg 571
Query: 372 ttgcttctagcatattcccaggcactatatagatgatactatgctggctctatttttagt 431
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttgcttctagcatattctcaggcactatatagatgatactatgctggctctatttttagt 631
Query: 432 tattgaggatcctccatgctgatttccatggagaatgtactactttaaatccccatcagc 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tattgaggatcctccatgctgatttccatggagaatgtactactttaaatccccatcagc 691
Query: 492 agtatatagggttcctttctcctgtgttcccacaggcatttgttatttgtttcctttggg 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 agtatatagggttcctttctcctgtgttcccacaggcatttgttatttgtttcctttggg 751
Query: 552 tttgctgttgttgtttgtttgtttgttttcttataagccttattttttctttttttgttt 611
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 752 tttgctgttgttgtttgtttgtttgttttcttataagccttattttttctttttt-gttt 810
Query: 612 ttaagagaaaacaaaacctaatacattgaaataggacaaaa 652
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ttaagagaaaacaaaacctaatacattgaaataggacaaaa 851
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 652
Length of database: 1051
Length adjustment: 10
Effective length of query: 642
Effective length of database: 1041
Effective search space: 668322
Effective search space used: 668322
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
