BAC Information

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BAC

Clone NameMSMg01-487L09
Chromosome1 (Build37)
Map Location 125,426,758 - 125,427,085
singlet/doubletsinglet
Overlap geneDpp10
Upstream geneLOC666983
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487L09.T7 (MSMg01no487_l09.b1)MSMg01-487L09.TJ (MSMg01no487_l09.g1)
ACCAG566608AG566609
length729658
length of high quality
(start - end)		678 (52 - 729)330 (79 - 408)
definitionCHROMAT_FILE: MSMg01no487_l09.b1 PHD_FILE: MSMg01no487_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:24 2005CHROMAT_FILE: MSMg01no487_l09.g1 PHD_FILE: MSMg01no487_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTGTTTATTATCACATTACATTTTTTGCCACTATGATTAA
CACAAAGTTGATAAAAATGTTTTTCCATTTTTTAGGCTGCAACTTGGTTC
AAATGATGATAATGGTGTCCTTTGCCTTACAGAAGTTTTTCAGTTTTATA
AGGTCCCATTTATTAATTGTTGATCCAATTGCCTCAACTAACAGTTTTCT
GTTCAGAAAAACTTTTTCTGTGCCAATGTATTTAAAGCTATCCCACACTA
TCTCTTCTTCAGCTTCAGTGTATGGGTTTTATGTTGAGGTTTTTGAAACA
CTTATACTTGAGTTTGTGATAAGCATGAATCTAATTAAATTCTTGTACTT
GCAGACACCTAGTTTGACCAGCACCATTTGTTGAATACGACATTTTTTCC
AGTGTGTATTTCTGACTTCTTAATAAAAATTCAGGTGTCCACAGATGTGT
GGATTTATGTTTGGGTCTTAAATTTGATTCCATTGACAACATGCCATTTA
AAAATGTGGTATAGATCTAAACAGGTAATTCTCAATGTAGGAATCTCAAA
TGGCTGAGTAATACTAAAATGTTCAACATTCTTAGCCATCAGGGTAATGC
AAATCAAAACCATTTTAAGATTCCATTTACACCTCTCAGAATAACTAAGA
TCAATAACAGAATTGACAGTTTATGCTGG

NTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAGCTAACATGTGATTTTGTAAT
TTATCTGTATTCTCCAAGATAAGTAAATGCAGCTGTAGCATACAACTTTT
AAAGGGAGCATAATTGATTACTAATTGACATGCAGTCTGCAATTTGAGCT
TCTCTCTACTCCATTTGCATTTCCTTGTGAATTCCAAGTAATGCCCTCAG
GTTGGACATACTTAGTTGCCCTCTCTCTGACCACATCTCATTCCCTAATT
TGTTTGGTTTGACTTGACAGCCCTTTCTTTTTAGTAGGAACTAAGGTGGA
TTTAGCATCTCTCTCTCTCTCTCTCCCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCNCCCNCNNTNNTTTTNTCCTTTTTTTTTNTNNTTTGGGGNGGGGA
TTGTGTTTCCCTTGGTTTAGCCCCCCCCCCCAGGGGGAAACTTCTTTCCC
CTNANTTTTTGAAAAAAAAAAAAGGGCCTGGGTTTTTAAATCCAACCTCC
CGGGGGGGAAAAAAAAAAATAGAGAGGGCGCCTTTTTGGGGTCCCCAAAA
TAAAAAGGTGGGGGGGGGGGTTATAAAAACAAAAAAGGGGGGGGGGTACT
TCCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_l09.g1 MSMg01no487_l09.g1 CHROMAT_FILE:
MSMg01no487_l09.g1 PHD_FILE: MSMg01no487_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:24 2005
         (330 letters)



>mm_chr1_125426608_125427336
          Length = 729

 Score =  549 bits (284), Expect = e-161
 Identities = 317/330 (96%), Gaps = 7/330 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctaacatgtgattttgtaatttatctgtattctccaagataagtaaatgcagctgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 agctaacatgtgattttgtaatttatctgtattctccaagataagtaaatgcagctgtag 419

                                                                       
Query: 61  catacaacttttaaag-ggagcataattgattactaattgacatgcagtctgcaatttga 119
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 catacaacttttaaagaggagcataattgattactaattgacatgcagtctgcaatttga 359

                                                                       
Query: 120 gcttctctctactccatttgcatttccttgtgaattccaagtaatgccctcaggttggac 179
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 358 gcttctctctactccatttgcatctccttgtgaattccaagtaatgccctcaggttggac 299

                                                                       
Query: 180 atacttagttgccctctctctgaccacatctcattccctaatttgtttggtttgacttga 239
           |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct: 298 atacttagttgctctctctctgaccccatctcattccctaatttgtttggtttgacttaa 239

                                                                       
Query: 240 cagccctttctttttagtaggaactaaggtggatttagcatctctc----tctctctctc 295
           ||||||||||||||||| |||||||| |||| ||||||||||||||    ||||||||||
Sbjct: 238 cagccctttctttttagcaggaacta-ggtg-atttagcatctctcactttctctctctc 181

                                         
Query: 296 tccctctctctctctctctctctctctctc 325
           || |||||||||||||||||||||||||||
Sbjct: 180 tctctctctctctctctctctctctctctc 151


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 729
Length adjustment: 9
Effective length of query: 321
Effective length of database: 720
Effective search space:   231120
Effective search space used:   231120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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