NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCC
GCGGAATTCCAGTCCTGTTCCACTTGGTGATGAACATGTGTAAACTGAAT
AAAACCTTTCCTCCCTAATTTGTTTCTTGGTCATAATGTTTTGTCCAGGA
ATAGAAACCTTGACTAAGACAGAGTGTTTGTGACTGGTTTGTATGTTTGT
GTTTGTGTGTGTGTGTGTTGTGTCTGTGTTTCTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTATGNNTNNNNNNCNNANNNTTNN
NNNTTTNNNTNTTNNTNNTNNNNTTTTTTTTTTTTTTNNANNNNNNNNNN
NNNNNNNNNNNNNNNNNNTTTTTTTTTTCNTTNTTNNNNTTTTNTNNTTT
TTTTTTTTTTTTNNNTTTTTTTTTTTTTTNNTCCCCCCNCCCCTTTTTTT
CCTTCCCCTTTTCCTTTTCTTTTCCTTTCCCCCTTTTTCCCCCTTTCTCC
TTTCTTCTTTCTTTTTTTTCTTTTTTTTTCCCTTTTTCTTCCCTCTTCTC
TCTTTTTCTCCCTCCTCTTTTTCTTCTCTTTTTTCCCCTCTTCCTCCTCT
TTTCTCTTTTTTCTTCTTCTTTCTTCCCTTCCCTTTCCTCTCCCTTTTCT
TCCCCTTTCCCCTTTTTTTCTCTCTTCCTCTCTTTCTCTTTTNTCCCCCC
CTTTTTTCTTTTTTTCTCTTNCCCCTTTCCCCCTTTTTTTTTTTCTCTCT
CTTTTCCCTCTCCCTCCTTCTCCTCTCTTTTCTTTCCATTTCCTCCCTTC
TTCTTTCCA

CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCACAGGAAAACCAACAGAGTCA
ATAATCTTAGACTTTTGGGCCTCTCAGAGACTGAATTCCTAATGAGAGAG
CATAGACAGGTGGGAACTAGGGCTGTCTAAATTATGTATCAGATGTGTAG
CTTGTTCCTCATGTGGGTCCCAAACATGTACAATGGGGACTATCCCAGAA
GCTTGTTCTGTATGCGGGCTATGTTCCATCTGGCTGTGTCATGTGGCTTC
AGTGGAAAATGATGTGCCTTGAATCACAGAAACTTGAAGTGCTAGGGTGG
AAGGATACCCAGAGGACCCCCACACTCTCAGACGAAAAGTAAATGTGGAT
GGGAGAAATTGTGGAGGTGGGTGAATAGGAAGAGAGCAGTGAATGGGATG
TAAAATGAATATGTAAAAAAAATCTTAAATAAAGGTAATTAAATGCATTT
TTGAAAAATAAAAATAAAGAGGAGGAGAAGGAGAGTGCAAAGGATAGGAA
AAGTAGTGTAGCAAATAAATATAAACAACCTAATTTTACTCACTGGATCA
ATAAAACAAAATAAAGAATAATAGCATTTTTGAGCAAGGGCTATATACCA
AGTTTTAATAATGTTTTTACCTTTATTTACTTATAAAGTTGTCAGTGCAT
TAAAGGCATTTGTTAAATATATGAAATTTATTTAATTTTAAATAATTTAT
AATTCTCCTTAGGAAATACAGAGAGAGT

Query= MSMg01no487_o24.g1 MSMg01no487_o24.g1 CHROMAT_FILE:
MSMg01no487_o24.g1 PHD_FILE: MSMg01no487_o24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:42 2005
         (614 letters)



>mm_chr1_112159577_112160590
          Length = 1014

 Score =  791 bits (409), Expect = 0.0
 Identities = 418/421 (99%)
 Strand = Plus / Minus

                                                                        
Query: 194  tgttccatctggctgtgtcatgtggcttcagtggaaaatgatgtgccttgaatcacagaa 253
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1014 tgttccatctggctgtgtcatgtggcttcagtggaaaatgatgtgccttgaatcacagaa 955

                                                                        
Query: 254  acttgaagtgctagggtggaaggatacccagaggacccccacactctcagacgaaaagta 313
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 954  acttgaagtgctagggtggaaggatacccagaggacccccacactctcagacgaaaagta 895

                                                                        
Query: 314  aatgtggatgggagaaattgtggaggtgggtgaataggaagagagcagtgaatgggatgt 373
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 894  aatgtggatgggagaaattgtggaggtgggtgaataggaagagagcagtgaatgggatgt 835

                                                                        
Query: 374  aaaatgaatatgtaaaaaaaatcttaaataaaggtaattaaatgcatttttgaaaaataa 433
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834  aaaacgaatatgtaaaaaaaatcttaaataaaggtaattaaatgcatttttgaaaaataa 775

                                                                        
Query: 434  aaataaagaggaggagaaggagagtgcaaaggataggaaaagtagtgtagcaaataaata 493
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 774  aaataaagaggaggagaaggagagtgcaaaggataggaaaagtagtgtagccaataaata 715

                                                                        
Query: 494  taaacaacctaattttactcactggatcaataaaacaaaataaagaataatagcattttt 553
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714  taaacaacctaattttactcactggatcaataaaacaaaataaagaataatagcattttt 655

                                                                        
Query: 554  gagcaagggctatataccaagttttaataatgtttttacctttatttacttataaagttg 613
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 654  gagcaagggctatataccaagttttaataatgtttttacctttatttagttataaagttg 595

             
Query: 614  t 614
            |
Sbjct: 594  t 594


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space:   606416
Effective search space used:   606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)