BAC Information

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BAC

Clone NameMSMg01-487P04
Chromosome1 (Build37)
Map Location 102,573,334 - 102,574,008
singlet/doubletsinglet
Overlap genenone
Upstream geneC230078M14Rik, LOC633295, EG666200
Downstream geneLOC100041909, LOC100040993, LOC383650
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-487P04.T7 (MSMg01no487_p04.b1)MSMg01-487P04.TJ (MSMg01no487_p04.g1)
ACCAG566789AG566790
length759760
length of high quality
(start - end)
371 (53 - 423)675 (80 - 754)
definitionCHROMAT_FILE: MSMg01no487_p04.b1 PHD_FILE: MSMg01no487_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:42 2005CHROMAT_FILE: MSMg01no487_p04.g1 PHD_FILE: MSMg01no487_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:10:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG
CGCGGAATTCCTTCTTTTTCTCCTCTACCATCATCATGAGATATGCTTTT
AAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGA
AGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAG
TAGGATTCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTT
GTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCTGTTGATTTTGTTACCC
TCTATCAGCAGGCGTGGGAGACATGCTCTCTTCTCTGAGTTTCAGTGGTC
AGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTGCAGTT
ATCTGGTGTTTGTACCTCCTCCCCCCCCACCGCGAAGGCCCAAAACAGGA
TCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGGAAGGTGGCCAGTTGTCTG
GAGTTGAAGATCTCGCCGCCTCAGAAGCTCTGTGGCTCTTGTCCGGAAGG
AGGCCGGCCGTCTGGAGCTGATGTTGGCGCCGCCTCAGAAGCTCTGTGGC
TCTTGCTGGGAAGGTGGCTGGTTGTCTGGAGCTGACGATGGCGCTGCCCC
AGAATCTCTGCGACTCTCTCGCCCGTCCCAGAAACGGCTGGCACTCTGTA
TTCACACGGTCACCCATGCAGCCTGCCCTCCGCGTAGTCCCGGAGCCAAT
ATAGCTTCC
NTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCGGACAAACGGATCCTTC
TAAGGCAAAGCTTTTATTGCTTACTTCTCAAGAAGACCCCGAACCCAGAA
AATGGCGCTGCTTATGTAGCCCGCAGTGTGACGTTTCAGCACCTGATGTG
GCGTGACAGCACCTGATTAGTTGCTCGCCCATCACCCCATTACTACGCCC
CGAGATGGGCAGCGACTGGGCGTGAATTCACTCTTGCACTTGTGCATAAG
GCTTGTTTACTAGTTAGGCGCAGTGGAAGCCAGCACCATCTTATACTGGC
GATTGCTCAAGGCACGGCTCTCCACATCAAGGCAGAAATTAAAAGCTGCA
CATGCACAGACAAGTGCAGAAAGGGTATAAGTACACTGATACTTCCTTGT
TTGCTACTAAGATGTTTCTCTTCATTCTAACACAACCAGAGTCCAGTCTG
TGAATGGTGATACCCACATTCCCAACATAATTAATAAGGCATTGTCCTAT
AGACAATCTATAGGCCAACCTGATCCTGACCATTCCTCAAAGGAGATCTC
CACAAGTTAATGCAAACTGACAAACACTTATGATCTAAACATTGGATGCC
ATAAAGATATGCAATGTGACTGATTTCACATATAAAATATACTGGGGAGA
GGGTATACAGAGGCTGCCTCCCAACAAAAGTAGAAGAAAAAGAGTGAACA
GAGAACGGGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no487_p04.g1 MSMg01no487_p04.g1 CHROMAT_FILE:
MSMg01no487_p04.g1 PHD_FILE: MSMg01no487_p04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:10:43 2005
         (675 letters)



>mm_chr1_102573134_102574208
          Length = 1075

 Score = 1220 bits (631), Expect = 0.0
 Identities = 664/675 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   actcggacaaacggatccttctaaggcaaagcttttattgcttacttctcaagaagaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 201 actcggacaaacggatccttctaaggcaaagcttttattgcttacttctcaggaagaccc 260

                                                                       
Query: 61  cgaacccagaaaatggcgctgcttatgtagcccgcagtgtgacgtttcagcacctgatgt 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaacccagaaaatggcgctgcttatgtagcccgcagtgtgacgtttcagcacctgatgt 320

                                                                       
Query: 121 ggcgtgacagcacctgattagttgctcgcccatcaccccattactacgccccgagatggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggcgtgacagcacctgattagttgctcgcccatcaccccattactacgccccgagatggg 380

                                                                       
Query: 181 cagcgactgggcgtgaattcactcttgcacttgtgcataaggcttgtttactagttaggc 240
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgactgggcgtgaattcactcttgcacttgtgcataaggcttgtttactagttaggc 440

                                                                       
Query: 241 gcagtggaagccagcaccatcttatactggcgattgctcaaggcacggctctccacatca 300
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 441 gcagtggaagccagcaccatcttatactggcgattgctcaaggcacgcctctccacatca 500

                                                                       
Query: 301 aggcagaaattaaaagctgcacatgcacagacaagtgcagaaagggtataagtacactga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcagaaattaaaagctgcacatgcacagacaagtgcagaaagggtataagtacactga 560

                                                                       
Query: 361 tacttccttgtttgctactaagatgtttctcttcattctaacacaaccagagtccagtct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tacttccttgtttgctactaagatgtttctcttcattctaacacaaccagagtccagtct 620

                                                                       
Query: 421 gtgaatggtgatacccacattcccaacataattaataaggcattgtcctatagacaatct 480
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 621 gtgaatggtgatacccacattcccaacataattaataaggcattgtcttatagacaatct 680

                                                                       
Query: 481 ataggccaacctgatcctgaccattcctcaaaggagatctccacaagttaatgcaaactg 540
           |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct: 681 ataggccaacctgatcctgaccatgcctcaaaggagatctccacaggttaatgcaaactg 740

                                                                       
Query: 541 acaaacacttatgatctaaacattggatgccataaagatatgcaatgtgactgatttcac 600
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 741 acaaacacttatgatctaaacattgaatgccataaagatatgcaatgtgactgatttcac 800

                                                                       
Query: 601 atataaaatatactggggagagggtatacagaggctgcctcccaacaaaagtagaagaaa 660
           |||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 801 atatgaaatctactggggagagggtatacagaggctgcctcccaataaaagtagaagaaa 860

                          
Query: 661 aagagtgaacagaga 675
           |||||||||||||||
Sbjct: 861 aagagtgaacagaga 875


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 675
Length of database: 1075
Length adjustment: 10
Effective length of query: 665
Effective length of database: 1065
Effective search space:   708225
Effective search space used:   708225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)