Query= MSMg01no488_e24.b1 MSMg01no488_e24.b1 CHROMAT_FILE:
MSMg01no488_e24.b1 PHD_FILE: MSMg01no488_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:11 2005
(600 letters)
>mm_chr1_134882269_134883268
Length = 1000
Score = 1152 bits (596), Expect = 0.0
Identities = 599/600 (99%)
Strand = Plus / Minus
Query: 1 gtgggtggcatgagatgctcgacttgtgtgtcgagaggcagtgtcatgacattcccagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 gtgggtggcatgagatgctcgacttgtgtgtcgagaggcagtgtcatgacattcccagtc 741
Query: 61 tggtacttgccagtgcagaagcaaatgaggggtaataaactgagaagaagggcagcttac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tggtacttgccagtgcagaagcaaatgaggggtaataaactgagaagaagggcagcttac 681
Query: 121 taacgaggccagagggaaatgtttccgtgtgtccttatgtaactttttacagtgccacta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taacgaggccagagggaaatgtttccgtgtgtccttatgtaactttttacagtgccacta 621
Query: 181 agttaatagccctgtacatgggtgtttgcactatgtaatgcttttaatgcggttttattg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agttaatagccctgtacatgggtgtttgcactatgtaatgcttttaatgcggttttattg 561
Query: 241 tgtttttgtgtgattaaacagttttcatttcattgtgttttgtcattattggaaataggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgtttttgtgtgattaaacagttttcatttcattgtgttttgtcattattggaaataggt 501
Query: 301 aattttgcttatgtacagctaacccattttctgttatctttggcatgatttggggaagtg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aattttgcttatgtacagctaacccattttctgttatctttggcatgatttggggaagtg 441
Query: 361 attaaaagtcagtggcagcttttccctaagttgcatattagagtaattgtattcatttct 420
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attaaaagtcattggcagcttttccctaagttgcatattagagtaattgtattcatttct 381
Query: 421 gcttcccatttcccaaagaaacgaaacatctgcagagtaatattaaaaatggagcttact 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcttcccatttcccaaagaaacgaaacatctgcagagtaatattaaaaatggagcttact 321
Query: 481 gtattttcaagtcaggattagtgcaaagtgtttgtcatgaaacatgcatgtccccagcat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gtattttcaagtcaggattagtgcaaagtgtttgtcatgaaacatgcatgtccccagcat 261
Query: 541 ctgctagagtgtccagcagtgactcatgaacctttttggagagtagagttcttggaaaat 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgctagagtgtccagcagtgactcatgaacctttttggagagtagagttcttggaaaat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_e24.g1 MSMg01no488_e24.g1 CHROMAT_FILE:
MSMg01no488_e24.g1 PHD_FILE: MSMg01no488_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:12 2005
(581 letters)
>mm_chr1_134701020_134701999
Length = 980
Score = 1048 bits (542), Expect = 0.0
Identities = 576/600 (96%), Gaps = 21/600 (3%)
Strand = Plus / Plus
Query: 1 caggctaacaccccactcctccagtgtggacctctgagatgctgtagggatgagaggtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 caggctaacaccccactcctccagtgtggacctctgagatgctgtagggatgagaggtga 240
Query: 61 gggaggaaacgctgggaaagtagcacatttcccttttggaagtaataaagcc-------- 112
||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 241 gggaggaaatgctggaaaagtagcacatttcccttttggaagtaataaagcccaggtcaa 300
Query: 113 ------------caggtcaataggctgctccaggcctgtgcatgcgataggcctgttaat 160
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tacgatgaagtgcaggtcaataggctgctccaggcctgtgcatgcgataggcctgttaat 360
Query: 161 gccgtccagagcttgatttcctgcagctcggcttaaatctttgaggctcgtttactccca 220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gccgtccagagcttgatttcctgcagctcggcttaaatctttgaggctcgtttactccca 420
Query: 221 acccctgcagcatgctctgatcaaagctcatcttcttccttcccaagagaatccaactca 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 acccctgcagcatgctctgatcaaagctcatcttcttccttcccaagagaatccaactca 480
Query: 281 aaggaggttccgagccttcttgaaacaagaggcccagtgatcaaattcagatcttgatat 340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aaggaggttccgagccttcttgaaacaagaggcccagtgatcaaattcagatcttgatat 540
Query: 341 aggaccggtgggcttctgaaaaaagaaacaaccaacctcttaaaggaaactgattcagct 400
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 aggac-ggtgggcttctgaaaaaagaaacaaccaacctcttaaaggaaactgattcagct 599
Query: 401 ggaggaaggagccttccttggtccttgcatgtttagatctctgctgcctggagttggggt 460
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 600 ggaggaaggagccttccttggtccttgcatgtttagatctctgctgcctggagttggggt 659
Query: 461 gggagggctggcgcttcagcagccactgaaacatgaaggaaacttgggaataaaagtcat 520
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 660 gggagggctggcgcttcagcagccactgaaacatgaaggaaccttgggaataaaagtcat 719
Query: 521 atgctggaggtggtagagcaagaagcaaaatattaaaatatttgtcaccattcttttctg 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atgctggaggtggtagagcaagaagcaaaatattaaaatatttgtcaccattcttttctg 779
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 581
Length of database: 980
Length adjustment: 10
Effective length of query: 571
Effective length of database: 970
Effective search space: 553870
Effective search space used: 553870
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
