BAC Information

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BAC

Clone NameMSMg01-488F16
Chromosome1 (Build37)
Map Location 177,970,262 - 178,125,622
singlet/doubletdoublet
Overlap genePld5
Upstream geneRgs7, Fh1, Kmo, Opn3, Chml, Wdr64, Exo1, Gm104, B020018G12Rik
Downstream geneCep170, Sdccag8, LOC666235, Akt3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-488F16.T7 (MSMg01no488_f16.b1)MSMg01-488F16.TJ (MSMg01no488_f16.g1)
ACCAG567097AG567098
length731763
length of high quality
(start - end)		661 (36 - 696)637 (77 - 713)
definitionCHROMAT_FILE: MSMg01no488_f16.b1 PHD_FILE: MSMg01no488_f16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:15 2005CHROMAT_FILE: MSMg01no488_f16.g1 PHD_FILE: MSMg01no488_f16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:11:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(177,970,262 - 177,970,919)(178,124,986 - 178,125,622)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAAGG
TTCTCCTTGAATAAAACAAGAGGAGACGAGGAATGCAGAAGCAAACATAT
ATGCAGGGCCTCCTGGTCTTTGAAATCCACCCCTGAGATGTTGGGAGTTT
GCAAAGCTTCAGAAATGAGTAAGAGATGTCATTTCAGGGCCACCACATTG
TATATTGTTGGGGCAATGCAGGGCATGTTGTTGGATGCAAGTGAACAGGA
TTTCTGAAAGAATTGTGACTTGATTTTTCTCATCCCAATGAAGTAATATA
AACATAGGTTTTTTGGTAAGCATACCTTATTTTTAAAAATTAGTGGTGGT
AAAGGTCAAATAAAAGCAAAAACTTCAGCATTGAGGGGCATAGGTTTGAA
TTTTAGCATCACCATTTCCTGGAAGGACACAGGACCCCAAATTGAATGAT
TTACAAGCAAGAGACATGGTGAAAATGGAAGGAACTCATGCCCTTCCTGC
ATGCATAGAGAAACGCCACGACACAGGGAAGTTGGAAGATCAGCTCTAAT
CACTTCTTTCACTTAGCACAGATTTCAAATAATCACTATTAGCCATAATC
TAGATTTCACTAGAAAAACACACAAAATATAAAGCTGAGGGAACAAGTTG
AACTTGACTCCTGGCAGGTGTATTCCGGTGAAAAGGAACACTCATTCAAG
GTGACATAGTGTTGAGTAACTTAGGTTTTAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTGTGTTTGTTTCTACTTCAA
AGAGTACATCATACACAAGCCATAAAGGAGAAGCAGTGGGCCTGTGGTGC
GGAAGACTAGTGCCATTCAATCCCACTCCACACACTGAGACCTAGAGAGT
TCAAGTTAGAAGGAGCCTGGTGGAAAGATTCTATTACCACAGGAAACTGA
CTTAGCTTATACCTTAAATCTCTGCTAAGCCTTACTCAATAGCATTTCTT
TTCTCTTTTAAAAGAGATCCTGTTATGAAACATACTGCGTCAGGGGCAGG
GGAGTACCTGGAGGTCCCCATGCCAAGTTGCCTCCTGAGAAATCTTGTCA
TGCAACAGACCTGGTGTAAAAGGGGAGTTATTTGAGGGGGAAAGGAGAGT
AAGGCCTGGAAAAGGGTCAGAAGCAGACAGGCAGGAGCAGAGCCATGAGG
GCAGAGAACAGGGGACAAAGAAGGACAGAAAGGAGGAGAGAGAGACCAGC
AAGAACTCTTGGAAATAAAAAGGGAGAAGCATCCCGAGTGCTGAGCATCC
CTCACCTGGCTGTAACTGTAGATCAAGCCCTAGGTTCTTGGAAGGAGCCC
AGTTGAATCACCTGCAAGCTAACAGAACCCTCTATGCATATCCTATGCAG
GCATCTGAGTTCCTCCNAGAGAATGGATTGATCCAGACTTGGATTTTTTT
AATTGATCAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no488_f16.b1 MSMg01no488_f16.b1 CHROMAT_FILE:
MSMg01no488_f16.b1 PHD_FILE: MSMg01no488_f16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:15 2005
         (661 letters)



>mm_chr1_177970059_177971119
          Length = 1061

 Score = 1234 bits (638), Expect = 0.0
 Identities = 653/658 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctaaggttctccttgaataaaacaagaggagacgaggaatgcagaagcaaacat 63
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctaagggagtccttgaataaaacaagaggagacgaggaatgcagaagcaaacat 263

                                                                       
Query: 64  atatgcagggcctcctggtctttgaaatccacccctgagatgttgggagtttgcaaagct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atatgcagggcctcctggtctttgaaatccacccctgagatgttgggagtttgcaaagct 323

                                                                       
Query: 124 tcagaaatgagtaagagatgtcatttcagggccaccacattgtatattgttggggcaatg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcagaaatgagtaagagatgtcatttcagggccaccacattgtatattgttggggcaatg 383

                                                                       
Query: 184 cagggcatgttgttggatgcaagtgaacaggatttctgaaagaattgtgacttgattttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagggcatgttgttggatgcaagtgaacaggatttctgaaagaattgtgacttgattttt 443

                                                                       
Query: 244 ctcatcccaatgaagtaatataaacataggttttttggtaagcataccttatttttaaaa 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 444 ctcatcccaatgaagtaatataaacatagcttttttggtaagcataccttatttttaaaa 503

                                                                       
Query: 304 attagtggtggtaaaggtcaaataaaagcaaaaacttcagcattgaggggcataggtttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 attagtggtggtaaaggtcaaataaaagcaaaaacttcagcattgaggggcataggtttg 563

                                                                       
Query: 364 aattttagcatcaccatttcctggaaggacacaggaccccaaattgaatgatttacaagc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aattttagcatcaccatttcctggaaggacacaggaccccaaattgaatgatttacaagc 623

                                                                       
Query: 424 aagagacatggtgaaaatggaaggaactcatgcccttcctgcatgcatagagaaacgcca 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 aagagacatggtgaaaatggaaggaactcatgcccttcctgcatgcatagagaaacgcca 683

                                                                       
Query: 484 cgacacagggaagttggaagatcagctctaatcacttctttcacttagcacagatttcaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 cgacacagggaagttggaagatcagctctaatcacttctttcacttagcacagatttcaa 743

                                                                       
Query: 544 ataatcactattagccataatctagatttcactagaaaaacacacaaaatataaagctga 603
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 744 ataatcactattagccataatctagatttcattagaaaaacacacaaaatataaagctga 803

                                                                     
Query: 604 gggaacaagttgaacttgactcctggcaggtgtattccggtgaaaaggaacactcatt 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 gggaacaagttgaacttgactcctggcaggtgtattccggtgaaaaggaacactcatt 861


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space:   684201
Effective search space used:   684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no488_f16.g1 MSMg01no488_f16.g1 CHROMAT_FILE:
MSMg01no488_f16.g1 PHD_FILE: MSMg01no488_f16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:15 2005
         (637 letters)



>mm_chr1_178124786_178125822
          Length = 1037

 Score = 1216 bits (629), Expect = 0.0
 Identities = 635/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttttgtgtttgtttctacttcaaagagtacatcatacacaagccataaaggagaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 tttttgtgtttgtttctacttcaaagagtacatcatacacaagccataaaggagaagcag 778

                                                                       
Query: 61  tgggcctgtggtgcggaagactagtgccattcaatcccactccacacactgagacctaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 tgggcctgtggtgcggaagactagtgccattcaatcccactccacacactgagacctaga 718

                                                                       
Query: 121 gagttcaagttagaaggagcctggtggaaagattctattaccacaggaaactgacttagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gagttcaagttagaaggagcctggtggaaagattctattaccacaggaaactgacttagc 658

                                                                       
Query: 181 ttataccttaaatctctgctaagccttactcaatagcatttcttttctcttttaaaagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 ttataccttaaatctctgctaagccttactcaatagcatttcttttctcttttaaaagag 598

                                                                       
Query: 241 atcctgttatgaaacatactgcgtcaggggcaggggagtacctggaggtccccatgccaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 atcctgttatgaaacatactgcgtcaggggcaggggagtacctggaggtccccatgccaa 538

                                                                       
Query: 301 gttgcctcctgagaaatcttgtcatgcaacagacctggtgtaaaaggggagttatttgag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 gttgcctcctgagaaatcttgtcatgcaacagacctggtgtaaaaggggagttatttgag 478

                                                                       
Query: 361 ggggaaaggagagtaaggcctggaaaagggtcagaagcagacaggcaggagcagagccat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ggggaaaggagagtaaggcctggaaaagggtcagaagcagacaggcaggagcagagccat 418

                                                                       
Query: 421 gagggcagagaacaggggacaaagaaggacagaaaggaggagagagagaccagcaagaac 480
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 417 gagggcagagaacaggggacaaagaaggacagaaagggggagagagagaccagcaagaac 358

                                                                       
Query: 481 tcttggaaataaaaagggagaagcatcccgagtgctgagcatccctcacctggctgtaac 540
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 357 tcttggaaataaaaagggagaagcatcccgagtgctgagcatccctcacctggctgtagc 298

                                                                       
Query: 541 tgtagatcaagccctaggttcttggaaggagcccagttgaatcacctgcaagctaacaga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 tgtagatcaagccctaggttcttggaaggagcccagttgaatcacctgcaagctaacaga 238

                                                
Query: 601 accctctatgcatatcctatgcaggcatctgagttcc 637
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 accctctatgcatatcctatgcaggcatctgagttcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space:   643929
Effective search space used:   643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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