Query= MSMg01no488_h20.b1 MSMg01no488_h20.b1 CHROMAT_FILE:
MSMg01no488_h20.b1 PHD_FILE: MSMg01no488_h20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:26 2005
(444 letters)
>mm_chr1_32689447_32690290
Length = 844
Score = 822 bits (425), Expect = 0.0
Identities = 437/441 (99%)
Strand = Plus / Minus
Query: 4 ggaattcagttttactgagtattggatagccgaattccacaactatttatgtgaagtaag 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ggaattcagttttattgagtattggatagccgaattccacaactatttatgtgaagtaag 417
Query: 64 tttggaaaatttaaaattcaaacactctggaatttctcatttttaatttcaaatccccag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 tttggaaaatttaaaattcaaacactctggaatttctcatttttaatttcaaatccccag 357
Query: 124 actctgtagccaattactccttcacaagttctctgtcaaaaataagcaggctgatcccaa 183
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 356 actctgaagccaattactccttcacaagttctctgtcagaaataagcaggctgatcccaa 297
Query: 184 gccaaagcaacaagaagctagttatgcctatttataattcactaggcatggttaatgact 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296 gccaaagcaacaagaagctagttatgcctatttataattcactaggcatggttaatgact 237
Query: 244 tgcatgcaaagttattagcatgtatcttgggcacagatgtcactgagggcattgtgtaat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 tgcatgcaaagttattagcatgtatcttgggcacagatgtcactgagggcattgtgtaat 177
Query: 304 atgctgtacgcacattactttgactttctaaaataaaataaattctaaatttaaatcatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 atgctgtacgcacattactttgactttctaaaataaaataaattctaaatttaaatcatc 117
Query: 364 tggttcactgtattgcaactattggatgaaagcctatgcttgttttaatccctatgtgtg 423
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 116 tggttcactgtattgcaactattggatgaaagcctatgcttgttttaatccctgtgtgtg 57
Query: 424 gtatgtgtggatataaggtgt 444
|||||||||||||||||||||
Sbjct: 56 gtatgtgtggatataaggtgt 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_h20.g1 MSMg01no488_h20.g1 CHROMAT_FILE:
MSMg01no488_h20.g1 PHD_FILE: MSMg01no488_h20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:26 2005
(379 letters)
>mm_chr1_32529979_32530757
Length = 779
Score = 706 bits (365), Expect = 0.0
Identities = 378/387 (97%), Gaps = 8/387 (2%)
Strand = Plus / Plus
Query: 1 aacaaaagctccattgcactagagttcctcctgaggcacacattactattttgggttcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 aacaaaagctccattgcactagagttcctcctgaggcacacattactattttgggttcac 252
Query: 61 ttatagctcccatgatgaggagttactgtcaggagcatgggtaacccaaaagcagccaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttatagctcccatgatgaggagttactgtcaggagcatgggtaacccaaaagcagccaca 312
Query: 121 ctgtgaagtcttcatccagcctggatcatggttttcttgtagctgtataagtaggatccc 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 313 ctgtgaagtcttcatccagcctggatgatggttttcttgtagctgtataagtaggatccc 372
Query: 181 ctcctccaagtcctccccaggctgtgtaatcaaacctgtccttca--------ggtaact 232
||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 373 ctcctccaagtcctccccaggctgtgtaatcaaacctgtccttcaaggccacaggtaact 432
Query: 233 ctggcagaagtgcatataattggcttcaagggttactagatattcaggtgagcttccaag 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctggcagaagtgcatataattggcttcaagggttactagatattcaggtgagcttccaag 492
Query: 293 gactcttgttctccttccttctatgagagaatatcaccatttaacaagcccagctgggtt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 gactcttgttctccttccttctatgagagaatatcaccatttaacaagcccagctgggtt 552
Query: 353 gtcatttacaaacagacacaactggta 379
|||||||||||||||||||||||||||
Sbjct: 553 gtcatttacaaacagacacaactggta 579
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space: 284900
Effective search space used: 284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
