Query= MSMg01no488_m13.b1 MSMg01no488_m13.b1 CHROMAT_FILE:
MSMg01no488_m13.b1 PHD_FILE: MSMg01no488_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:48 2005
(389 letters)
>mm_chr1_63001826_63002614
Length = 789
Score = 737 bits (381), Expect = 0.0
Identities = 387/389 (99%)
Strand = Plus / Plus
Query: 1 cttgttcccattcattaagtcacaataacttttttgttcacccgaagtgcctgggacaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgttcccattcattaagtcacaataacttttttgttcacccgaagtgcctgggacaag 260
Query: 61 gttcagtgggcaatggcattgacggtactactaattgaaatcccgtccaaagcttagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcagtgggcaatggcattgacggtactactaattgaaatcccgtccaaagcttagcac 320
Query: 121 ctacagaatggaagccagccaaatcatcccaggcctttcataaaagcgtcttcctgcccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctacagaatggaagccagccaaatcatcccaggcctttcataaaagcgtcttcctgcccc 380
Query: 181 caacccctgggcctaatccaccattaagttagctgtttgaaggatttgaacagtccaacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caacccctgggcctaatccaccattaagttagctgtttgaaggatttgaacagtccaacc 440
Query: 241 actgaatgccctagtactcaagattctcagggaaaaaattataaatgcatggggtggatt 300
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 actgaatgccctagtactcaagattcgcagggaaaaaattataaatgcatggggtggatt 500
Query: 301 cacaggcacgcatgaagaaatggatgcatgaaccgatgaatagtgaacatcaatccaaaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cacaggcacgcatgaagaaatggatgcatgaaccgatgaatagtgaacatcaatccaaaa 560
Query: 361 gggttgatcctctgtcccgtaccacactc 389
|| ||||||||||||||||||||||||||
Sbjct: 561 ggtttgatcctctgtcccgtaccacactc 589
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space: 296400
Effective search space used: 296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no488_m13.g1 MSMg01no488_m13.g1 CHROMAT_FILE:
MSMg01no488_m13.g1 PHD_FILE: MSMg01no488_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:11:48 2005
(664 letters)
>mm_chr1_63162819_63163882
Length = 1064
Score = 1205 bits (623), Expect = 0.0
Identities = 652/667 (97%), Gaps = 11/667 (1%)
Strand = Plus / Minus
Query: 1 aggccatcctggtctacacagtgagttccagaccagccagggctactacatagtaggact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1012 aggccatcctggtctacacagtgagttccagaccagccagggctactacatagtaggact 953
Query: 61 gactcaagccaaaccaaacagaagagagaataaaataacacatacattaaagtgtctagc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 gactcaagccaaaccaaacagaagagagaataaaataacacatacattaaagtgtctagc 893
Query: 121 tgatcagtgggcagcactcgcctttaagaagtccaggacctggaaggcagagattaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 892 tgatcagtgggcagcactcgcctttaagaagtccaggacctggaaggcagagattaagat 833
Query: 181 ggagctctgagttcgaggccaacctggtctacagtctacagtgccaggacagccagggct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 ggagctctgagttcgaggccaacctggtctacagtctacagtgccaggacagccagggct 773
Query: 241 ac----ttttataaaccttgtctcatcccctacactcccctcaaaaccctaaaaagtatt 296
|| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 acacag----agaaaccttgtctcatcccctacactcccctcaaaaccctaaaaagtatt 717
Query: 297 aactttaatgaaatgcagcttcagcttgtgaagggaggcgatcaccggctatataaagga 356
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 716 aactttaatgaaatgcagcttcagcttgtaaagggaggcgatcaccggctatataaagga 657
Query: 357 aggcacacacgaggagagacatggggccacacacatgcttctcaggtccactgcgacctg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 aggcacacacgaggagagacatggggccacacacatgcttctcaggtccactgcgacctg 597
Query: 417 caatggacgcttactctcttgtatgaccactgtgctttatgtccaagggggacagaacaa 476
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 caaaggacgcttactctcttgtatgaccactgtgctttatgtccaagggggacagaacaa 537
Query: 477 atactgggctgagtgggtgatgtgactaatactggcacaaaaagctatgagttccatgct 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 atactgggctgagtgggtgatgtgactaatactggcacaaaaagctatgagttccatgct 477
Query: 537 agcctgaactacctactgagtccagggccagcttgggttagatagcaagatcctttcaac 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 agcctgaactacctactgagtccagggccagcttgggttagatagcaagatcctttcaac 417
Query: 597 aaatcaaaccaaaccaaaccatcaacaaaaatgtaaatatctgggggcgggggagggtgt 656
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 416 aaaccaaaccaaaccaaacca---acaaaaatgtaaatatctgggggcgggggagggtgt 360
Query: 657 gggggac 663
|||||||
Sbjct: 359 gggggac 353
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space: 689316
Effective search space used: 689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
