BAC Information

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BAC

Clone NameMSMg01-489A15
Chromosome1 (Build37)
Map Location 144,371,476 - 144,371,638
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC639376
Downstream geneLOC545369
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489A15.T7 (MSMg01no489_a15.b1)MSMg01-489A15.TJ (MSMg01no489_a15.g1)
ACCAG567619AG567620
length701806
length of high quality
(start - end)
166 (74 - 239)---
definitionCHROMAT_FILE: MSMg01no489_a15.b1 PHD_FILE: MSMg01no489_a15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:08 2005CHROMAT_FILE: MSMg01no489_a15.g1 PHD_FILE: MSMg01no489_a15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:12:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNGGGCTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCTAGAGGAGG
CGCGGAATTCACAAAATTTCCTTTTTGCTCAAATGTCCAGACACTGATAT
TATCAGTTTCCATGACAGTATGGATGGGAGACAGCCCTCCCCTGGACAAT
GAGAAATTAAATGTTGCTGAAAGAGGGATAATTAGTCTTCTTCAGAAATG
AACACCTAAATCATATCCAATGCCTAGCCCTAAAAGNNCACANNTACTTT
AAGAAAGCCANAGGCCCCTTAAAAATGGGACTCAAGCCCACGGGGNGTTG
GGNAGAATTTTTTNNNAAANTTTTATTTACCGGGGCCCCTTAAAACACCT
TTTTTTAAAAAAATTTGTTTTGGGGGAAATTTTTAAAGGGGGGAGGGGGG
CCCCAAAAAAAATTTTAAAANNNNNNNNNNNNANNNNAGCTNNNNNNNNN
NNNTNNTTTTTNNCNGTCTTTCTCGGCTTTAATTTNTTTTTTTAATTNNN
TTAATTTTTGGNNNNNNNNNNNNNNNNNTTACNNNNNNTGNGGGNNNNNN
NNNNGTGNNNNNNCCCNCNCNCNNNNNNTNNNNTGGGTGGGGGGTGGGGA
GGNNNNNGNGAGGAGAAAGGATANNNCCATGCTGCTTTTTTTTTAANNAA
ATANTTTTTTTTTTTTAAAAAAAGGAGAGGGGGGGGCGGGCGGNAAGAAG
G
NGGGCACAAAGAGAGGGAGGGAAAGGGAGNGAGGGGGGGCGGGGGGTTTT
TTTTTAATTTTCTAANGGGNGAGGGGTNNGNGGTTTTTTTTTTCTTTTTT
TTACTTGTGCGCTTTANTAGGGCANGGNNGCGGCGNCCCNCCCCNNNNNN
NNNNNNNNNNNCGGCCTTTTTTTTTATTTTAAATTTGGGGGNTTTTAGGG
CTTCTTTTGGGGGCGGGGGCCCGCGCCCCCCGGGGGGTCTTTTTTTTCAA
AAAAAAATTTTTTTGAGGGGGTTGGAAACCCCTTTTTTTTTTGAAAAAAG
TTTTTTTTTCTTTTCGGGAAAAAAAATTTTTTTTTTTTTCCCCCTTTTTG
GAAGGGGAAAATTTTTTTTTTTTAAAATATTGGGGTTTTTTTAAAAAAAA
AAAAAAATCTCTTTTTTGTTAAAAAAAAAAAATTTTTTTTTTTTTTCCCC
CAACCCCTTTTTTTTTTTTTAACAACCCCCCCCCCGGGGGGGGGAAAAAA
TATTTCCTCCCCTTTTTTTTCTCAAAAAAAAAAAAACACCCCCTTTTTTT
AAAAAAATTTTTTTTTTTCCCCCGCCGGCGGAGAAAAAAANNNNNTTTTT
TTATTAAAAAAAAATTGTTGTTGGCCCCCACAAAACATTCATAAAAAAAA
AATTTTTTTTTTTTTTTTTTGTGGGTGGGGGGGGGCCCCCCCAACAAAAA
AAAATTTTTTTTTTTTTTTTTGTTTAAAAAAAAAAAAAAATTTATTTTTT
TTTGGCGGGAGGTAAAAAAAAAAAAAAAAAAAAAAAATTTTATTTTTTTT
TTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_a15.b1 MSMg01no489_a15.b1 CHROMAT_FILE:
MSMg01no489_a15.b1 PHD_FILE: MSMg01no489_a15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:08 2005
         (166 letters)



>mm_chr1_144371276_144371841
          Length = 566

 Score =  315 bits (163), Expect = 7e-91
 Identities = 163/163 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgctcaaatgtccagacactgatattatcagtttccatgacagtatggatgggagaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgctcaaatgtccagacactgatattatcagtttccatgacagtatggatgggagaca 260

                                                                       
Query: 61  gccctcccctggacaatgagaaattaaatgttgctgaaagagggataattagtcttcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gccctcccctggacaatgagaaattaaatgttgctgaaagagggataattagtcttcttc 320

                                                      
Query: 121 agaaatgaacacctaaatcatatccaatgcctagccctaaaag 163
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agaaatgaacacctaaatcatatccaatgcctagccctaaaag 363


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 566
Length adjustment: 8
Effective length of query: 158
Effective length of database: 558
Effective search space:    88164
Effective search space used:    88164
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)