Query= MSMg01no489_e08.b1 MSMg01no489_e08.b1 CHROMAT_FILE:
MSMg01no489_e08.b1 PHD_FILE: MSMg01no489_e08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:26 2005
(653 letters)
>mm_chr1_188081826_188082876
Length = 1051
Score = 1195 bits (618), Expect = 0.0
Identities = 640/648 (98%), Gaps = 2/648 (0%)
Strand = Plus / Minus
Query: 5 gaattcagagttgaccccagaagaaaatatagcacaagaccccttcagatcagcagaggc 64
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 gaattcagagctgaccccagaagaaaatatagcacaagaccccttcagatcagcagaggc 791
Query: 65 atcttgaagaaaaggctggtgtaggtgggggagcatcctaagtgcgctctaattcaacct 124
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790 atcctgaagaaaaggctggtgtaggtgggggagcatcctaagtgcgctctaattcaacct 731
Query: 125 atgcctgaacaaccaaaatggtaacatccatctgcccctcactaggtaacttagaagcct 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 atgcctgaacaaccaaaatggtaacatccatctgcccctcactaggtaacttagaagcct 671
Query: 185 aaagtatgagctacctgactccttttggtatatttcctacaccgctttgaaggtctgtca 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 aaagtatgagctacctgactccttttggtatatttcctacaccgctttgaaggtctgtca 611
Query: 245 catctgagcatcctttctgaggtattcttcccttgtaagatacaaggatgtactagttag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 catctgagcatcctttctgaggtattcttcccttgtaagatacaaggatgtactagttag 551
Query: 305 tcagttttggttggccacaagagaaaaatcaactatgtaggttgaccagaaagcccattc 364
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 tcagatttggttggccacaagagaaaaatcaactatgtaggttgaccagaaagcccattc 491
Query: 365 agcgggaagccacaaggactcagaggaagttcttgattttctcctagattgttaatagct 424
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 agtgggaagccacaaggactcagaggaagttcttgattttctcctagattgttaatagct 431
Query: 425 gagtgccttggttctctgtagggagtgaatttatagaataaactttgaggatctaaaaat 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 gagtgccttggttctctgtagggagtgaatttatagaataaactttgaggatctaaaaat 371
Query: 485 aacaatagaataagttggtaagcaaaagccaactgatctttataacaattgtaaatttca 544
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aacaatggaataagttggtaagcaaaagccaactgatctttataacaattgtaaatttca 311
Query: 545 aaataaaaagacaagtcacctagggagtgattgacagttcccatcgtcattaaactgatt 604
||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||
Sbjct: 310 aaataaaaagacaagtcac--agggagtgattgacagttcccatcatcattaaactgatt 253
Query: 605 atccttttaggcctacttctaggccataggctattgaaagctcatgtg 652
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 atccttttaggcctacttctaggccataggctattgaaagctcatgtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1051
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1041
Effective search space: 669363
Effective search space used: 669363
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_e08.g1 MSMg01no489_e08.g1 CHROMAT_FILE:
MSMg01no489_e08.g1 PHD_FILE: MSMg01no489_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:26 2005
(657 letters)
>mm_chr1_187894214_187895270
Length = 1057
Score = 1218 bits (630), Expect = 0.0
Identities = 651/658 (98%), Gaps = 2/658 (0%)
Strand = Plus / Plus
Query: 1 attctgtacttggctgcacaatgatgcttgcacaaaaataaactataaccaaaaaattag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attctgtacttggctgcacaatgatgcttgcacaaaaataaactataaccaaaaaattag 260
Query: 61 ggttgtatccctagttcttatgaaagaaagtctaatggacaatccaatgctcacgtaatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggttgtatccctagttcttatgaaagaaagtctaatggacaatccaatgctcacgtaatc 320
Query: 121 cagagagaagtaataatgctgacatcacccctgactgcatgtctagtgtgtgatagtcac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagagagaagtaataatgctgacatcacccctgactgcatgtctagtgtgtgatagtcac 380
Query: 181 tatgcaggcac-aacgaactccagttcttgccctccaacacaatttggggtgaatgcaaa 239
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatgcaggcactaa-gaactccagttcttgccctccaacacaatttggggtgaatgcaaa 439
Query: 240 ttgatatttctaagataaacacagaacaaaaaagaacttgtcatttctgttcaaaacaag 299
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttgatatgtcaaagataaacacagaacaaaaaagaacttgtcatttctgttcaaaacaag 499
Query: 300 tcgttatcaatatctgtgtctgaaatatatgagtttgtcacttgaggagatgatgacatt 359
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tcgttatcaatatctatgtctgaaatatatgagtttgtcacttgaggagatgatgacatt 559
Query: 360 ccagtcagaagatataatatgctataggcaaagctgtaaaggggtttgacacttctcagt 419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ccagtcagaagatatactatgctataggcaaagctgtaaaggggtttgacacttctcagt 619
Query: 420 agggagagaaaagaaggctggggtctgggaggaggaggagagttactgtgtgcctgtgtt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 agggagagaaaagaaggctggggtctgggaggaggaggagagttactgtgtgcctgtgtt 679
Query: 480 gtgacaggggagtctgaaaaggacaagggtcagatggtgaaaggtttccaccaagaatat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gtgacaggggagtctgaaaaggacaagggtcagatggtgaaaggtttccaccaagaatat 739
Query: 540 gaatgcttttccaaaggcagaacagactggaagtgtgcaaaacttgttaggtagtggcat 599
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 740 gaatgcttttccaaaggcagagcagactggaagtgtgcaaaacttgttaggtagtggcat 799
Query: 600 aagccactagcttcactggcatgctatagaccaaataaaaagaaaggaggagagagca 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 aagccactagcttcactggcatgctatagaccaaataaaaagaaaggaggagagagca 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
