NNTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCATATGATTAATAGCTGTGTCATATCTAGAAGATAGAACTTTAT
GCCTCTCTTCCCTAGTTGGATCTTATATTCTTTCCCTTGCAGGGGTTGGG
GGTGAAGGTGACACAGATGTCCCATCTATGGCTGAGGACTGAAAACCTCC
TTGCAGCATTGCAACTCTGTACTTGGTTGCTTAAATGAATGTGGAGCTTG
AGAAAAAGACAACAGTTACTCCTGAAAGAATAAAAAACAAAACTTAATTA
AAAATCAATAAGCCTGAGTTGTTTCTAATGGGCTCACTCTTTTGCTATGC
GATTTCCCTGTAGCCTTCCTTGAGAGCATCACATGCCTACACATAGGATG
GCCATCAAGCCACAAATTCTCCCCAAAACACACTGGCTCCAATTCTAGAC
TATTACTTGTTATGAATTGCAGTGGTTTTACTTTAACTATAGAAATTTCT
GCTATTATAGAAAAATAATTGTTTAATTGTGGAAAGCAAAGACTTAATAT
TTTGCTACCCAAGGTCACACAAAAATTTCTCAGGCACAAAAAAAAAAAGT
GTTATACATACAAAAGGTCTAAAATGCCCTGGTCTAACTCAGAGAAATGA
AGATAAGGACTACATTTTTCCTACGAAATAAGTTAGTACTTGATCTNCAG
ATTTAAAAAGAAGAAGAGGAAGAGGNNAGAGAAANGNANNGAGANAAGGA
GGAGAGGACCTANNAAGAACATGTAAGGTCN

CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTGGTTTCTCCATCTATGGTAATTGA
AAGTTTGGCTGGGTATTGTATCCTGGGCTGGCATTTGTGTTCTCTTAGTG
TCTGTATAACATCTGTCCAGGATCTTCTGGCTTTCATAGTCTCTGCTGAA
AAGTCTGGTGTAATTCTGATAGGCCTGCATTTATATGTTACTTTACCCTT
TTCCCTTACTGCTTTTAATATTCTATCTTTATTTAGTGCATTTTCTGTTC
TGGTTATTATGTGTCTTTAGGAATTTCTTTTCTGGTCCAGTCTATTTGGA
GTTCTGTAGGCTTCTTGTATGTTCATGGGCATGTCTTTCTTTAGGTTTGG
GAAGTTTTCTTCTATAATTTTGTTAAAGATATTTGCTGGGCCTTTGAATT
GAAAATCTTCATTCTCATCTACTCCTATTATCCTTAGTTTTGGTCTTCTC
ATTGTGTCCTGGATTTCCTGGATGTTTTGACTTAGGATCTTTTTGCATTT
TGCATTTTCTTTGATTGTTGTGCTGATGTTCTCTATGGAATCTTCTGCAC
CTGAGATTCTCTCTTCCATCTCTTGTATTCTGCTGCTGGNGCTCGCATCT
ATGGTTCCAGATTTCTTTCCTAGGGTTTCTATCTCCAGCTTTGCCTCACT
CTGGGGTTTCTTTATTGTGTCCACTTCCTTTTTAGGTCTAGAATGGGTTT
GTTCATTTCCTCACCTG

Query= MSMg01no489_h15.b1 MSMg01no489_h15.b1 CHROMAT_FILE:
MSMg01no489_h15.b1 PHD_FILE: MSMg01no489_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:43 2005
         (594 letters)



>mm_chr1_185615184_185616177
          Length = 994

 Score = 1060 bits (548), Expect = 0.0
 Identities = 560/564 (99%), Gaps = 1/564 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatatgattaatagctgtgtcatatctagaagatagaactttatgcctctcttcc 64
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 gaattcatatgaacaatagctgtgtcatatctagaagatagaactttatgcctctcttcc 505

                                                                       
Query: 65  ctagttggatcttatattctttcccttgcaggggttgggggtgaaggtgacacagatgtc 124
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 ctagttggatcttatattctttcccttgcaggggttgggggtgagggtgacacagatgtc 445

                                                                       
Query: 125 ccatctatggctgaggactgaaaacctccttgcagcattgcaactctgtacttggttgct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ccatctatggctgaggactgaaaacctccttgcagcattgcaactctgtacttggttgct 385

                                                                       
Query: 185 taaatgaatgtggagcttgagaaaaagacaacagttactcctgaaagaataaaaaacaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 taaatgaatgtggagcttgagaaaaagacaacagttactcctgaaagaataaaaaacaaa 325

                                                                       
Query: 245 acttaattaaaaatcaataagcctgagttgtttctaatgggctcactcttttgctatgcg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 acttaattaaaaatcaataagcctgagttgtttctaatgggctcactcttttgctatgcg 265

                                                                       
Query: 305 atttccctgtagccttccttgagagcatcacatgcctacacataggatggccatcaagcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttccctgtagccttccttgagagcatcacatgcctacacataggatggccatcaagcc 205

                                                                       
Query: 365 acaaattctccccaaaacacactggctccaattctagactattacttgttatgaattgca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 acaaattctccccaaaacacactggctccaattctagactattacttgttatgaattgca 145

                                                                       
Query: 425 gtggttttactttaactatagaaatttctgctattatagaaaaataattgtttaattgtg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 gtggttttactttaactatagaaatttctgctattatagaaaaataattgtttaattgtg 85

                                                                       
Query: 485 gaaagcaaagacttaatattttgctacccaaggtcacacaaaaatttctcaggcac-aaa 543
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 84  gaaagcaaagacttaatattttgctacccaaggtcacacaaaaatttctcaggcacaaaa 25

                                   
Query: 544 aaaaaaaagtgttatacatacaaa 567
           ||||||||||||||||||||||||
Sbjct: 24  aaaaaaaagtgttatacatacaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space:   574656
Effective search space used:   574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)