Query= MSMg01no489_i20.b1 MSMg01no489_i20.b1 CHROMAT_FILE:
MSMg01no489_i20.b1 PHD_FILE: MSMg01no489_i20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:49 2005
(661 letters)
>mm_chr1_152986365_152987425
Length = 1061
Score = 1214 bits (628), Expect = 0.0
Identities = 646/652 (99%)
Strand = Plus / Plus
Query: 7 attctcatcattgtgttaaggtttgccataactcagtatgccctcacttaacttgattac 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 attctcatcattgtgttaaggtttgccataactcagtatgccctcacttaacttgattac 266
Query: 67 attttaaaactctaccaaggtaaggttgttactacactttagaaggggtccccattcagt 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 attttaaaactctaccaaggtaaggttgttactacactttagaaggggtccccattcagt 326
Query: 127 ccataatgccacgtctctcagatattccatgaccattcatgtgtgtggtctggaaacttg 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 327 ccataatgccacgtctctcagatattccatgaccattcatgtgtgtggtctggaaccttg 386
Query: 187 aggtattataaagtgaggaaaacattgactactagagctgaaagcagctaggcaggaacc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 aggtattataaagtgaggaaaacattgactactagagctgaaagcagctaggcaggaacc 446
Query: 247 taactctctttttttccacagacaattacctgacttgcaagcaagcaaccattgagaccc 306
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 447 taactctctttttttccacagacgattacctgacttgcaagcaagcaaccattgagaccc 506
Query: 307 aggatgaagtcaggtatggggggtggtgcaactaatcccagcaccatggatatagaggaa 366
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 507 aggatgaagtcaggtatgggggatggtgcaactaatcccagcaccatggatatagaggaa 566
Query: 367 taaggatcagcagttaaaaggatagcttttgctgcataacaagttcagatccagcctggg 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 taaggatcagcagttaaaaggatagcttttgctgcataacaagttcagatccagcctggg 626
Query: 427 ctacatgagaccctgacaaaaaataagaacccacaaagctaacgtgtgagaatgatttgc 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ctacatgagaccctgacaaaaaataagaacccacaaagctaacgtgtgagaatgatttgc 686
Query: 487 tctctgtatacagaggatagagacagtgtctacaacacctcgcctacctctgttagtgtt 546
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 687 tctctgtatacagaggatagagacagtgtctacaacacctcacctacctctgttagtgtt 746
Query: 547 tgtcttgaggagactaagaaatctaaaggtgctaagagtcacccatagtccataacccat 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 747 tgtcttgaggagactaagaaatctaaaggtgctaagagtcacccatagtccataatccat 806
Query: 607 ctcacctctgccttaaaggaagcgcatcaagtatgagcatagaatacagatg 658
||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 ctcgcctctgccttaaaggaagcgcatcaagtatgagcatagaatacagatg 858
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1061
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1051
Effective search space: 684201
Effective search space used: 684201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no489_i20.g1 MSMg01no489_i20.g1 CHROMAT_FILE:
MSMg01no489_i20.g1 PHD_FILE: MSMg01no489_i20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:49 2005
(534 letters)
>mm_chr1_153156558_153157492
Length = 935
Score = 926 bits (479), Expect = 0.0
Identities = 485/487 (99%), Gaps = 1/487 (0%)
Strand = Plus / Minus
Query: 49 ggactgtttctagaagaggggttgattagaatccagagacttatcttgatctactgctac 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 935 ggactgtttctagaagaggggttgattagaatccagagacttatcttgatctactgctac 876
Query: 109 caaatgagcttgtgtccactgtagtctaactccttccccctccctctctccgtcttacct 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 875 caaatgagcttgtgtccactgtagtctaactccttccccctccctctctccgtcttacct 816
Query: 169 ctccccctccgcttcccttcctccctccactatcccatgcttttcttcactttccttttt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 815 ctccccctccgcttcccttcctccctccactatcccatgcttttcttcactttccttttt 756
Query: 229 cctccctggcctccttcctcacgtgtaaaaaggaatacaagaaaatagcagtttttcact 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 cctccctggcctccttcctcacgtgtaaaaaggaatacaagaaaatagcagtttttcact 696
Query: 289 ctgtgaaaacataaggacgcctcctcagtcgtccttcctaatggtggctcctttgctcag 348
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 695 ctgtgaaaacataaggacgcctccttagtcgtccttcctaatggtggctcctttgctcag 636
Query: 349 gccactgcaaagttctg-ccccccccccatcttcctcttgggcaaatatttactgccaaa 407
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 gccactgcaaagttctgcccccccccccatcttcctcttgggcaaatatttactgccaaa 576
Query: 408 gtgatagcagagctatctttttttaaatagaatttccaaggactacaatagtaatatttg 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtgatagcagagctatctttttttaaatagaatttccaaggactacaatagtaatatttg 516
Query: 468 cttgcaactgagcacttacgaaaatataaaacatttatttcataacccacaattccatta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cttgcaactgagcacttacgaaaatataaaacatttatttcataacccacaattccatta 456
Query: 528 tctgcag 534
|||||||
Sbjct: 455 tctgcag 449
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 534
Length of database: 935
Length adjustment: 10
Effective length of query: 524
Effective length of database: 925
Effective search space: 484700
Effective search space used: 484700
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
