NNNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGC
GCGGAATTCTCAACTGATACCTACTGAATGGCTGAGAAGCACCTGAAAAA
AATGTTCAACATCCTTAATCATCAGGGAAATGAAAATCAAAACAACCCTG
AGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGA
CAGCAGATGCTGGAGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGCT
GGTGGGATTGCAAACTGGTACAACCACTCTGGAAATCAGTCTGGCAGTTC
CTCAGACAATTGGACATAGTACTACCGGAAGATCCAGCAATACCTCTCCT
GGGCATATACCCAGAAGATGTTCCCAGTTGTAATAAGGATACATGCTCCA
CTATGTTCATAGCAGCCATATTTATAATAGCCAGAAGCTGGAAAGAACCC
AGATGCCCCTCTACAGAGGAATAGATACAGAAAATGTGGTACATTTACAC
AATGGAGTACTACTCAGCTATTAAAAACAATGAATTCATGAAATTCTTAG
GCAAATGGATGAACCGCCTCACAGTTCTATCTCCAGAACCTGGAGGAAAT
GCACTGTTGTTTACACCATGTCCTCTGTGGTACCTTGTGGAAATGCAAGC
ACACAAAAAGATGAACCCTATGAACACTGTATAAAANTAAAACACTGCAT
TAGCCTGGGCATTANGACAATTCAAAAACTTAAATACTTTTATATTCCGA
ATTTACATAAAGACTTCTGGTTTTC

NNNNCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCACTGTGATAGTAAGTTCTT
GGAGTGAGAGGAGAAACCTTTGCTCTACATACTGTCTGGATTTTACTTCT
GCACTTTCTTCCCCTGAGTGGTAAAATGAAGTTTGCTACTTTCTGTGATT
TCTAATTACCTTGTTACCTATTTACATAGCCGGATTTTCTTAGCCAACAA
TTAGATTTTAGACATATAATTTTATACTGAAGAAGAATCTATTAACCTTC
TCTGTGCATTAATCATTTTCTTGTATATTAAGTTGCCTAATTAGGTGGTT
CCTTCAAAAAGCCAATTCTAAGATTAATAGGGCAAATTGGAGCAAAATAC
TATACATTTAAAAGAAATGACTTGCAGACATACATATCCTAATGGTTCTC
TGATCAAATTTCTATGTCTCAGACCTGTAATAAAACTTATTTCAGGAAAT
ATATGTTTTATCAGGACAAAGCTGGTACACTTTGGTTTCTTGTTTTTTGT
TTGTTTGTTTGGGGCAGGAGGAGTTGGCTTTTGGTTTTGCTTTCTTTTGA
TGTTTGGTTTGTTGGTGCTTCCTTACTTCATGTGCACCCAGATTCTGAAG
GTAAACAGAGCACCCCCTTCTTTTCTTTCATGGGCATTAGAATGTGCTTA
TTTTCCTTACTGCTGCCTGCCACGCAACAAGCTCTTGACAAAAATGTGAC
TGGGAACTCAG

Query= MSMg01no489_j24.g1 MSMg01no489_j24.g1 CHROMAT_FILE:
MSMg01no489_j24.g1 PHD_FILE: MSMg01no489_j24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:12:55 2005
         (524 letters)



>mm_chr1_11623976_11624900
          Length = 925

 Score =  934 bits (483), Expect = 0.0
 Identities = 510/519 (98%), Gaps = 3/519 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   atagtaagttcttggagtgagaggagaaacctttgctctacatactgtctggattttact 67
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 atagtaagttcttggagtgagaggagaaacctttgctctacatactgtctggattttact 267

                                                                       
Query: 68  tctgcactttcttcccctgagtggtaaaatgaagtttgctactttctgtgatttctaatt 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tctgcactttcttcccctgagtggtaaaatgaagtttgctactttctgtgatttctaatt 327

                                                                       
Query: 128 accttgttacctatttacatagccggattttcttagccaacaattagattttagacatat 187
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 328 accttgttacctatttacatagccggattttcttagctaacaattagattttagacatat 387

                                                                       
Query: 188 aattttatactgaagaagaatctattaaccttctctgtgcattaatcattttcttgtata 247
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 388 aattttatactgaagaagaatctattaaccttctctgtgcattaatcattttcttgtaaa 447

                                                                       
Query: 248 ttaagttgcctaattaggtggttccttcaaaaagccaattctaagattaatagggcaaa- 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 448 ttaagttgcctaattaggtggttccttcaaaaagccaattctaagattaatagggcaaaa 507

                                                                       
Query: 307 ttggagcaaaatactatacatttaaaagaaatgacttgcagacatacatatcctaatggt 366
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 ttggaacaaaatactatacatttaaaagaaatgacttgcagacatacatatcctaatggt 567

                                                                       
Query: 367 tct-ctgatcaaatttctatgtctcagacctgtaataaaacttatttcaggaaatatatg 425
            || |||||||||||||||||||||||||||| |||||||||||||||||||||||  ||
Sbjct: 568 -cttctgatcaaatttctatgtctcagacctgaaataaaacttatttcaggaaatacgtg 626

                                                                       
Query: 426 ttttatcaggacaaagctggtacactttggtttcttgttttttgtttgtttgtttggggc 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 ttttatcaggacaaagctggtacactttggtttcttgttttttgtttgtttgtttggggc 686

                                                  
Query: 486 aggaggagttggcttttggttttgctttcttttgatgtt 524
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 687 aggaggagttggcttttggttttgctttcttttgatgtt 725


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 524
Length of database: 925
Length adjustment: 10
Effective length of query: 514
Effective length of database: 915
Effective search space:   470310
Effective search space used:   470310
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)