BAC Information

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BAC

Clone NameMSMg01-489K21
Chromosome1 (Build37)
Map Location 89,989,470 - 89,990,022
singlet/doubletsinglet
Overlap geneUgt1a@, Ugt1a10, Ugt1a9
Upstream geneAlpi, Akp3, Ecel1, 1700027L20Rik, Chrnd, Chrng, Eif4e2, Efhd1, Tnrc15, LOC100040600, LOC100040591, 3110079O15Rik, Ngef, LOC620454, Neu2, Inpp5d, Atg16l1, Sag, Usp40, LOC545344, LOC677561
Downstream geneUgt1a7c, Ugt1a6a, Ugt1a6b, Ugt1a5, Ugt1a2, Dnajb3, Ugt1a1, LOC100040766, 6430706D22Rik, LOC100038822, Trpm8, Spp2, Glrp1, Arl4c, LOC100040127, 2410088K16Rik, LOC208347, Sh3bp4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489K21.T7 (MSMg01no489_k21.b1)MSMg01-489K21.TJ (MSMg01no489_k21.g1)
ACCAG568105AG568106
length1,374776
length of high quality
(start - end)
---555 (74 - 628)
definitionCHROMAT_FILE: MSMg01no489_k21.b1 PHD_FILE: MSMg01no489_k21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:00 2005CHROMAT_FILE: MSMg01no489_k21.g1 PHD_FILE: MSMg01no489_k21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TACTATATCNCACTCTCTTATTCTATATACCTCTTNTTTCACTCAACATG
CTGACTTTTTTCTCTTATCTCAGCAGNAGGGCGGAGGGCGCCGAGGCCCG
TATCGCGCCGCCATCATACGAAANTCATAGNCAGTCCCCCGCCTGCGTCC
ACGGCGACTCCGACGACGCCCGCGACGATATGTTACAGTAATATAAGATG
ATTACAGCTGTAAATAGCATAGTACTTTAGACTCGGTTAATATGGTATGA
TGTACGACTTTCACGCGCGTATATATGTCGTCGCAGCAGATTCGCGCGAC
GTACGAATTATCTCTTCTCAGTCGCGACTTATCTCGTTCGTGTCCTCGCC
GGCCGCCCCGCTCAATAGCATTAATGCGCGATCGAGCCGCAATATATAGC
ATAGTCACGTNTAGAGAGCGGACGATCATATACTTNCGACGTTCCGCAGT
TACAGCATTGTAGCATCGTCTCTTATACCGCTCACAAAACAAAAGAAGAA
TGGATACAATACACACAACACAGAGCCGTTAGAGTAGAGGAATAGAATCT
ACGCAGAATGCACATAACAGCATGTCACGGATGGGATTAGCGCGTTTTCC
GCACGTTGAGACATCTGAAAANACTTAAGTAACTCACCCGCTTAGCAGAC
GCTGAGGATAAATGTCAGATAAACAAGAAATATAATATAATATAAAAGTG
CGTGACGCGCAGACATAATCATAGGCGCCAACACGACCGCTAGATATAAG
TGGCGCCAAAATTATCTGAACAACACACATAATAAGGATATTTCGTGTAA
AATGTCCTCCCGAATGTCGAACGCCCAAATGATATTTAGCANATATCATT
TCACTCGTCCCGAGCGTTACGCGCCGCGCCACAAATTAAATAACATCATC
TACAGTATGTGGGACGTAACCGACATGAAGGAGAAAGTANTATATTATAN
AGGAACGTGAAGGTGTAGACCACGCATTACGTCGGCGGAGAGGCGACACA
CACAGCGAACGATTATCATATATATAAGAAGACGCCGACATGCAGCACCG
TGAGTGAATAGCGAGATAATATAGCACTCCCCCGCCATCCGTGTACTACA
CGCGGTTANTGTTGTGGCATGTATAGGGCACTCAACAAGCANGNCACCGT
AGAAATGGTAAAGAAAGACGAGTGTAACGGTAAATAAGATGGTCAGCGAT
GAAGTATAGNGAATATATGGTTATCGATTATAGATAGTATCGACGCCGGC
GCGACACGCCAAATATTATATGCGCGCACTCTCCGCTTATTCGTCGTTCG
CGTTCGTCTTGTGTTGTTAGTAGTACTATATCGCCGCTACGTTATGCGTT
GAGGCACTGTAGCGATCTGTATGN
NCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTTATTTAGGATTCAGGTGAATTCAG
GTCCACTACTCCTTTTCTTTCTCTGGATATGTTTTACAACAGCAAACCTG
TACACTTTAATTCTTACTAATTTATGACTAGCATTTTAAAAGACTTTGTT
TATCTTTAAAACAATAATAGAATAGAACAGAAAGATGCTTACTTGGAATC
ATTTGTGTAAAATGTATATAACACTTTATCAAGTAAAATACATGCATTCA
TTAACAACATAGTTTTCGAATCTTGTCAGAATGAAAAATATGTTTAATAT
TAAAATAGTTGGTATAACAACAAACTATACATATCGTCATAATCACTGAA
AATAATTCATGGGGCTGGAGATGTGATTCAGTAGTTGAGAATAACACTCA
CTTCTCAGAAGAACCCAGATTTAATTCCCAGCAACCACCTCGAAACTTGT
AAAGTAACTCCAGACCCACAGATTTCTTCTGGTCTCTATGGACACTGCAT
GCATGTGGTGCACATACATATGTGGAGGCAAAACACACACACACACACAC
ACATAAATAAATAATACCTAAAAATCTACCAAATACTCTGTGATATACCC
AACNTTTGAAAATTTTAAATAAATGTTATTATTTAAAATCCATGTTAATA
TGCCAAGGGTGACTGGTGGTGCATGCTTTTCATCCCGGCACTCATGAAGC
TGAGTGTGCTGGATATCTGAGTTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_k21.g1 MSMg01no489_k21.g1 CHROMAT_FILE:
MSMg01no489_k21.g1 PHD_FILE: MSMg01no489_k21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:00 2005
         (555 letters)



>mm_chr1_89989270_89990224
          Length = 955

 Score = 1031 bits (533), Expect = 0.0
 Identities = 549/555 (98%), Gaps = 2/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttatttaggattcaggtgaattcaggtccactactccttttctttctctggatatgtt 60
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 ttttatttaggattcaggtgaattcaggtccaccactccttttctttctctggatatgtt 260

                                                                       
Query: 61  ttacaacagcaaacctgtacactttaattcttactaatttatgactagcattttaaaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttacaacagcaaacctgtacactttaattcttactaatttatgactagcattttaaaaga 320

                                                                       
Query: 121 ctttgtttatctttaaaacaataatagaatagaacagaaagatgcttacttggaatcatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctttgtttatctttaaaacaataatagaatagaacagaaagatgcttacttggaatcatt 380

                                                                       
Query: 181 tgtgtaaaatgtatataacactttatcaagtaaaatacatgcattcattaacaacatagt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgtaaaatgtatataacactttatcaagtaaaatacatgcattcattaacaacatagt 440

                                                                       
Query: 241 tttcgaatcttgtcagaatgaaaaatatgtttaatattaaaatagttggtataacaacaa 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttcgaaacttgtcagaatgaaaaatatgtttaatattaaaatagttggtataacaacaa 500

                                                                       
Query: 301 actatacatatcgtcataatcactgaaaataattcatggggctggagatgtgattcagta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actatacatatcgtcataatcactgaaaataattcatggggctggagatgtgattcagta 560

                                                                       
Query: 361 gttgagaataacactcacttctcagaagaacccagatttaattcccagcaaccacctcga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttgagaataacactcacttctcagaagaacccagatttaattcccagcaaccacctcga 620

                                                                       
Query: 421 aacttgtaaagtaactccagacccacagatttcttctggtctctatggacactgcatgca 480
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aacttgtaaagtaactccaggcccacagatttcttctggtctctatggacactgcatgca 680

                                                                       
Query: 481 tgtggtgcacatacatatgtggaggcaaaacacacacacacacacacacataaataaata 540
           || |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||
Sbjct: 681 tgcggtgcacatacatatgtggaggcaaaacacacacacacacacaca--taaataaata 738

                          
Query: 541 atacctaaaaatcta 555
           |||||||||||||||
Sbjct: 739 atacctaaaaatcta 753


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)