CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTAAGGTGCCCTGGTTGTCCTGGAACTCACTCTGTAGACCAGGC
TGGGTTTAAATTCATAGAGATCCACTGCCTGTTGAGTGCCGGGGTTAACA
TCATGCGCCGCCTTGCCTGATTCTCACTTCTTTTAGATTAAGTCCATTCT
GGACGGCAGTTCACACCAGGCCAATCTCTCAAACACTGTCGACATAGCAG
CTCTCAAAACGGTGAAATTTGGTGAACGCACTCACCATAACGTGTGTTTA
TTTGCTGACTCTGCTCGCTCTGTGAATTTCTCATTTCTCATGAATGCACA
TTTCATGGCTGCATTCTTTGCATTCCACTGTGAATTTTGAGAACTTTGGT
TTTCCATACTAGTCTCCTGGTAGATAGCTAATATTCACCTTTTCCCTCTC
TCCCCTGTAGCTAGTTCTCCTTTTCATCTTACAGTCTCAGAGGTTTAATT
TTGTTGAAATCCAACTCACCAAATTTTCCTTTAAGCAATTGTGCCTTTTC
ATGCGGAATCTAATAACTCCTTGCCCAATCCAATATCTTGATATTTTATC
TGATAGTTTTTTCAAGAAGTTGTAGCTTCACGGCATACACATACACNTGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTTTTTTTTTTNNTNTTTTTTTNTGTTTTNTTNTNTT
TNNTNTTTNTTTTTTTTTTTTTTTT

ACGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGCTGATTTGATTCAAATAAATTTAGG
AAGTTAGAATAATTGATAGAAAGTTTAAGAAGATGGTTTAAATTGTTGTG
CCAGAAAGATATAATAAAGTCAGAATCAAGAATAGAATGTGCCCCTTTCT
CATGGAATAGGAAGAAAAGGCTTCATGGAAAGGTGGACAACGAGCTTTCA
TGCACTACAATCATGTAGCTTGCACCAGGAAATAGAATAGATTTAGAACA
AATTAATGATCATGGGAAAATTATTCATTCTAGGTCAGGTCCAAGGATGA
GGTTATAGGTGTACACTATGATAAAGCAAGATCGTGTAAAACCACTGCTT
TGAACTAATGAGCTTATAGAATGAAACGCTACTTTGAAGTTATAATCAGC
ATCCTGCTGTAACTCCCTCCTGTGTAACATTTTTATCTATGAGGTAATTT
TTCTTAAACAGAGAACTTTTCTCTAAAAAGCTATAGAAAGCTGAAAGCAA
AATAAAGCTAACTGTACCTCCTTTCTGCATCATTGTGTGCGTGTGTGTGT
GTGTGTGCGCGCGTGTGTGTGCACGCATGTGTGTGCGTGTGAGTGTGGGT
GGGTTGTGGGTGTNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTN
TNNNTNNTTTTNNNTNNTTTNTTTTTTTTTTTTTTTNNTTTTTTTTNTTT
TTTTTTTTTN

Query= MSMg01no489_o16.b1 MSMg01no489_o16.b1 CHROMAT_FILE:
MSMg01no489_o16.b1 PHD_FILE: MSMg01no489_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:20 2005
         (636 letters)



>mm_chr1_100016724_100017759
          Length = 1036

 Score = 1114 bits (576), Expect = 0.0
 Identities = 621/641 (96%), Gaps = 9/641 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctctaaggtgccctggttgtcctggaactcactctgtag---accaggctgggt 60
           |||||||||||||| ||||||||||||||||||||| ||||||||   ||||||||||||
Sbjct: 201 ggaattctctaaggagccctggttgtcctggaactcgctctgtagaccaccaggctgggt 260

                                                                       
Query: 61  ttaaattcatagagatccactgcctgttgagtgccggggttaacatcatgcgccgccttg 120
           ||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttaaattaatagagatccactacctgttgagtgccggggttaacatcatgcgccgccttg 320

                                                                       
Query: 121 cctgattctcacttcttttagattaagtccattctggacggcagttcacaccaggccaat 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccgattctcacttcttttagattaagtccattctggacggcagttcacaccaggccaat 380

                                                                       
Query: 181 ctctcaaacactgtcgacatagcagctctcaaaacggtgaaatttggtgaacgcactcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctctcaaacactgtcgacatagcagctctcaaaacggtgaaatttggtgaacgcactcac 440

                                                                       
Query: 241 cataacgtgtgtttatttgctgactctgctcgctctgtgaatttctcatttctcatgaat 300
           ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattatgtgtgtttatttgctgactctgctcgctctgtgaatttctcatttctcatgaat 500

                                                                       
Query: 301 gcacatttcatggctgcattctttgcattccactgtgaattttgagaactttggttttcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcacatttcatggctgcattctttgcattccactgtgaattttgagaactttggttttcc 560

                                                                       
Query: 361 atactagtctcctggtagatagctaatattcaccttttccctctctcccctgtagctagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atactagtctcctggtagatagctaatattcaccttttccctctctcccctgtagctagt 620

                                                                       
Query: 421 tctccttttcatcttacagtctcagagg------tttaattttgttgaaatccaactcac 474
           ||||||||||||||||||||||||||||      ||||||||||||||||||||||||||
Sbjct: 621 tctccttttcatcttacagtctcagaggagtaggtttaattttgttgaaatccaactcac 680

                                                                       
Query: 475 caaattttcctttaagcaattgtgccttttcatgcggaatctaataactccttgcccaat 534
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 681 caaattttcctttaagcaattgtgccttttcatgcagaatctaataactccttgcccaat 740

                                                                       
Query: 535 ccaatatcttgatattttatctgatagttttttcaagaagttgtagcttcacggcataca 594
           ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ccaatatcttgatgttttgtctgatagttttttcaagaagttgtagcttcacggcataca 800

                                                    
Query: 595 catacacntgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 635
           ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 801 catacacatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 841


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 15
Number of successful extensions: 15
Number of sequences better than 10.0: 1
Number of HSP's gapped: 10
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)