BAC Information

Click to search

BAC

Clone NameMSMg01-489O17
Chromosome1 (Build37)
Map Location 174,166,735 - 174,167,356
singlet/doubletsinglet
Overlap genenone
Upstream geneNdufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2, LOC100040199, Nhlh1, Ncstn, Copa, Pex19, LOC100041219, Wdr42a, Pea15a, Casq1, Timm23p
Downstream geneAtp1a2, Igsf8, Kcnj9, Kcnj10, Pigm, LOC665819, Slamf9, LOC100040274, Igsf9, Tagln2, Ccdc19, EG240916, Slamf8, Fcrl6, Dusp23, LOC100040320, Crp, LOC665875, Apcs, Olfr16, GA_x5J8B7W5Q1F-395172-396104, Olfr1408, GA_x5J8B7W5Q1F-344462-343889, Olfr1406, Olfr218, Olfr1405-ps1, Olfr1404, Fcer1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489O17.T7 (MSMg01no489_o17.b1)MSMg01-489O17.TJ (MSMg01no489_o17.g1)
ACCAG568281AG568282
length770761
length of high quality
(start - end)		638 (49 - 686)622 (77 - 698)
definitionCHROMAT_FILE: MSMg01no489_o17.b1 PHD_FILE: MSMg01no489_o17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:20 2005CHROMAT_FILE: MSMg01no489_o17.g1 PHD_FILE: MSMg01no489_o17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTACAGTCTGGATCTCATGGAGGCATTTCCTCAACTGAAGC
TCCTTCCTCTGTGATGACTCTAGCTTATGTCAAATTGGCGCACAAAACCA
GCCAGAACAACTGACCCCTTGTCAACTTGACACACAAACACATCACTATT
AAGCCACAACCCATTCCTTTCTTACTCATCTCCAAGATCTCACATTAAGA
ACATAAATAACGTTGGAAATCCTACAGTCTTTACGAACTCAAATACATTA
AAATTTCAATCACTCCAAGATAGCCAATCTCTTTTAAAATTTGGCATCTT
TTAAAAACTTAAAGTCTCTCAAGTGTGGGCTGTAGTAAAATAAAAAATAA
ACTGAATCTTTTTTATTATTATTATTTCAAAAGGGAAAAACCAGGGTATA
GTCACAATCAAATCAAATCAAAATCAAACTCCAATTGTCCAGTGTCTAGG
ATCCACTCACGATCTTCTGGCGTGCTCCAATGGGCTTGGATTATCTCTCC
TGCTCTGTACTCTGTAGCACACAGCTTGTCTTCTAGGCAAAAGCTGACTC
CACTCCACCTCTGCTGCTGTTCTTGGTAGTCATCTCACATTTTCGGCATC
TCCAAAACACTGGGGTCTTCTGCTGCAACTGGGCGGTACTTTCACCAGTA
GCCTCTCCTAGGCTCTTTTCATGGTGCCAAGCCTTTACTTCACTGCATGA
CCCCCTCAGTCCTGGCTCTT

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTAAGTTCTGGAAGGATTTGATT
TCCCATATGTTGGAGCCACCTATACCTCTCATGTTCTCACAGAGTGGTAC
CAACTAGTCTTGTGTTCCTGTCCACCCTTTTCTCCCAGATCAGACCATCT
GAAACTTTCAAATGTCAGTAAGAAAGCTATGTCGCTAGGACAGCTTTCAA
AGCTTGGTTTCTTTGTAGAGGGAACCAGGCTTATAATGCGACATGTATTT
TTATTCTACTGAAATCTTTTTTATAAATATGATGGGAGTATTTTCTAATT
TTTTAAAAAATCACATTTGTTTCAAAGTCATGGGCATAGGGCTACCTGCT
CAGTCCTGTTATCATTCCCTTGTAAAAGGCTTTGGGGCCATGCAACAATT
ATATGACTTCTTTTATTCTGTAGTCTGTGACAGTCATCAGCTGTGTGTCA
CCACCACTTGGGGCAGGGCAGGAGGCTTGACTCTGGAAGGGTTTGCTTCA
GAACAAGCTCCTCTGTGTCAGTTACATTTTGTACATTTTGAAAGATGATG
CTGTTCACCTGTCTTATACTTCCCTCCAGGGAGACAGAATGAGTCACGAT
CCCTCAACGGAATCTGCCAGCTTTCCCATCAGGTTAGCGAGCGTCCAGGA
GGAGGTACACATTGTAGAGAAACCCATAAACGGGCTCAGAAAAGGCCAGC
TCATAAAGACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_o17.g1 MSMg01no489_o17.g1 CHROMAT_FILE:
MSMg01no489_o17.g1 PHD_FILE: MSMg01no489_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:20 2005
         (622 letters)



>mm_chr1_174166535_174167556
          Length = 1022

 Score = 1172 bits (606), Expect = 0.0
 Identities = 618/622 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attaagttctggaaggatttgatttcccatatgttggagccacctatacctctcatgttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attaagttctggaaggatttgatttcccatatgttggagccacctatacctctcatgttc 260

                                                                       
Query: 61  tcacagagtggtaccaactagtcttgtgttcctgtccacccttttctcccagatcagacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcacagagtggtaccaactagtcttgtgttcctgtccacccttttctcccagatcagacc 320

                                                                       
Query: 121 atctgaaactttcaaatgtcagtaagaaagctatgtcgctaggacagctttcaaagcttg 180
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 321 atctgaaactttcaaatgtcagtaagaaagctatatcgctaggacagctttcaaagcttg 380

                                                                       
Query: 181 gtttctttgtagagggaaccaggcttataatgcgacatgtatttttattctactgaaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtttctttgtagagggaaccaggcttataatgcgacatgtatttttattctactgaaatc 440

                                                                       
Query: 241 ttttttataaatatgatgggagtattttctaattttttaaaaaatcacatttgtttcaaa 300
           ||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttactgataaatatgatgggagtattttctaattttttaaaaaatcacatttgtttcaaa 500

                                                                       
Query: 301 gtcatgggcatagggctacctgctcagtcctgttatcattcccttgtaaaaggctttggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtcatgggcatagggctacctgctcagtcctgttatcattcccttgtaaaaggctttggg 560

                                                                       
Query: 361 gccatgcaacaattatatgacttcttttattctgtagtctgtgacagtcatcagctgtgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gccatgcaacaattatatgacttcttttattctgtagtctgtgacagtcatcagctgtgt 620

                                                                       
Query: 421 gtcaccaccacttggggcagggcaggaggcttgactctggaagggtttgcttcagaacaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtcaccaccacttggggcagggcaggaggcttgactctggaagggtttgcttcagaacaa 680

                                                                       
Query: 481 gctcctctgtgtcagttacattttgtacattttgaaagatgatgctgttcacctgtctta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gctcctctgtgtcagttacattttgtacattttgaaagatgatgctgttcacctgtctta 740

                                                                       
Query: 541 tacttccctccagggagacagaatgagtcacgatccctcaacggaatctgccagctttcc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tacttccctccagggagacagaatgagtcacgatccctcaacggaatctgccagctttcc 800

                                 
Query: 601 catcaggttagcgagcgtccag 622
           ||||||||||||||||||||||
Sbjct: 801 catcaggttagcgagcgtccag 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space:   619344
Effective search space used:   619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |