NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTTTCTTTGAGCCCCATATTTTAATGGGGTTATTTG
ATTTTCTGGAGTCTACCTTCTTGAGTTCTTTATATATATTGGATATTAGT
CCCCTATCTTATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGG
CCTTTTTGTCTAATTGACAGTGTCTTTTGCTTTACAGAAGCTTTGCAATT
TAATGAGGTCCCATTTGTTGATTCTCGATCTTACAGCACAAGCCATTGCT
GTTCTATTCAGGAAAAATTCCCCTGTGCCCATATCTTTGAGGCTTTTCCC
CACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATATGTAGTTCAT
TTGCAAAACACATGAAACTCAAGAAGAACAAAGACCAAAGTTTGGACACT
TTGCCCCTTCTTAGAATTGGAAACAAAACACCCATGGAAGAAGTTACAGA
GGCAAAGTTTGGAGCTGAGATGAAAGGATGTACCATCTAGAGACTGCCAT
ACCCCGGGATCTATCACATAATCAGCCTCCAAATGCTGACACCAATACAT
ACACTAGCAAGATGTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGA
GACTATGCCAGGGCCTAGCAAGCACAGAAGTGGACGCTCACACTCAGCTA
TTGGATGGATCACAGGGCCTCCAATGGAGGAGCTAGAGAAAGTACCCAAG
GAGCTAATGGGGTCTGCAACC

NACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAATAAACATTAATGTGTAA
GTGTTTTATAGTTTTATATAGTCATATAAAATCATCCCTGAACAACAACA
AAAAAAATGAATGTAAAATTGTCTAGGAAGACAAAGGGGGAAAATGAGAA
GGGTAGCAGTGGAAAAGAGAAAATTGCAGGTAAGGAGAAAATGTACAGCA
TACAATAGACAACTTTAAGATAATTTAAAAGTAAAGTAATAACATAAAAA
TGTATTTAAAATTGCTAGTGGCAAAACTAGATTGTAGGGTAATGCAATTC
TGATACTCATATAATAGAATCATATTAATTGTAATGAATTTAAAAATAAT
GATGATGACTGTGACGTTCAACCTCAGTAATCTTCCTGAGGACAACTAGA
GTCACCTGAGAGGTTGGTCACTGGTATACCTGTGTGGTATCATCTAATAA
TTCATTGCTTCTTGCTTTGTAAGTGCAAATAAAATGAAATCGATTGCTTC
ACTGTCTTCTGAAAAGACCTCTCTGTCATGATGGTGTGTACTTTTGAGTT
GTGGGCCAAAAATAAACCCATTCTTATTACTATTACCTTTGCTTTGCTAG
GATATTTTATCACAGTTATAGGAAAAGAATTTCATANANACACACTCNCA
CACACACACACACACACACACNCNCAACACACATACACACATACCCCCAC
ACATATGGGGCTGGTTTTCATTATCAGTAAGTATCC

Query= MSMg01no489_o21.g1 MSMg01no489_o21.g1 CHROMAT_FILE:
MSMg01no489_o21.g1 PHD_FILE: MSMg01no489_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:21 2005
         (520 letters)



>mm_chr1_116364694_116365614
          Length = 921

 Score =  862 bits (446), Expect = 0.0
 Identities = 502/526 (95%), Gaps = 11/526 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaataaacattaatgtgtaagtgttttatagttttatatagtcatataaaatcatccc 60
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 721 ctaaataaacattaatgtgtaagt-ttttatagttttatatagtcatataaaatcatccc 663

                                                                       
Query: 61  tgaacaacaacaaaaaaaatgaatgtaaaattgtctaggaagacaaagggggaaaatgag 120
           |||||||    |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 662 tgaacaa----aaaaaaaatgaatgtaaaattgtctagggagacaaagggggaaaatgag 607

                                                                       
Query: 121 aagggtagcagtggaaaagagaaaattgcaggtaaggagaaaatgtacagcatacaatag 180
           |||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 606 aagggtagcagttgaaaagagaaaattgcaggtaaggattaaatgtacagcatacaatag 547

                                                                       
Query: 181 acaactttaagataatttaaaagtaaagtaataacataaaaatgtatttaaaattgctag 240
           ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct: 546 acaactttaagataatttaaaagtaaaataataacataaaaatttatttaaaattgctag 487

                                                                       
Query: 241 tggcaaaactagattgtagggtaatgcaattctgatactcatataatagaatcatattaa 300
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 tggcaaaactaggttgtagggtaatgcaattctgatactcatataatagaatcatattaa 427

                                                                       
Query: 301 ttgtaatgaatttaaaaata------atgatgatgactgtgacgttcaacctcagtaatc 354
           ||||||||||||||||||||      ||||||||||||||||||| ||||||||||||||
Sbjct: 426 ttgtaatgaatttaaaaataatgatgatgatgatgactgtgacgtacaacctcagtaatc 367

                                                                       
Query: 355 ttcctgaggacaactagagtcacctgagaggttggtcactggtatacctgtgtggtatca 414
            ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 366 atcctgaggacaactagagtcacctgagaggttggtcactggcatacctgtgtggcatca 307

                                                                       
Query: 415 tctaataattcattgcttcttgctttgtaagtgcaaataaaatgaaatcgattgcttcac 474
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 306 tctaataattcattgcttcctgctttgtaagtgcaaataaaatgaaattgattgcttcac 247

                                                         
Query: 475 tgtcttctgaaaagacctctctgtcatgatggtgtgtacttttgag 520
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 tgtcttctgaaaagacctctctgtcatgatggtgtgtacttttgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 921
Length adjustment: 10
Effective length of query: 510
Effective length of database: 911
Effective search space:   464610
Effective search space used:   464610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)