BAC Information

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BAC

Clone NameMSMg01-489P01
Chromosome1 (Build37)
Map Location 172,958,765 - 172,959,122
singlet/doubletsinglet
Overlap geneFcgr4
Upstream geneDdr2, LOC100040571, Uap1, Uhmk1, Sh2d1b2, EG622708, Sh2d1b1, EG665574, 1700015E13Rik, Nos1ap, LOC100040002, LOC640532, Olfml2b, Atf6, Dusp12, Fcrlb, Fcrla, LOC100040778, Fcgr2b
Downstream geneFcgr3, 1700009P17Rik, Sdhc, Mpz, Pcp4l1, Nr1i3, Tomm40l, Apoa2, Fcer1g, Ndufs2, Adamts4, B4galt3, Ppox, Usp21, Ufc1, EG622236, Dedd, Nit1, Pfdn2, 1190002J23Rik, Pvrl4, Arhgap30, Usf1, EG226654, F11r, Refbp2, Itlna, Cd244, Ly9, Slamf7, Cd48, LOC100041098, Slamf1, Cd84, Slamf6, Vangl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-489P01.T7 (MSMg01no489_p01.b1)MSMg01-489P01.TJ (MSMg01no489_p01.g1)
ACCAG568297AG568298
length772740
length of high quality
(start - end)		347 (54 - 400)481 (81 - 561)
definitionCHROMAT_FILE: MSMg01no489_p01.b1 PHD_FILE: MSMg01no489_p01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:22 2005CHROMAT_FILE: MSMg01no489_p01.g1 PHD_FILE: MSMg01no489_p01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTCTTTTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCTATATGTACTCTCATGAAGACTTAAGTTATCTATTT
GTCTATATAGCAACACGACAAGATCTTCATGGATCTGCAGAGATCTGCTC
CAAAAGGGTGTGCTACTACTTAGTGATTGTTATATATATTTAATAGTAAC
AGAAAAAGCATATTAACAGGAAAAGCATATTAATAGCAGGAATCTTTCCT
AAAATTAGTCCCTCACAGCCTTGCTTAATGAGGGCTCACCTGTTGCAGAT
TATATAATAATCCAAAGCAGGCCACTTCAGGATGATCATCTGCTTCCTAT
TATGGCTCCTGACAGAGTGGGGGGGGGAGAGAGAGGGAGAGAGAGGGATN
NNNNNNNNNNNNNNNNNCCCCCCCTTTTNNNNNCCTCCTTTCCTGTCCCC
CGTCTTTTCCCCCCCGCCCGTCTTCTTTGCTTTCCCGCTCTTTTTTCTTT
CCTCCTTTTTCTTTTCTCTTTTTTTCTCCCCCTCTTTTTTCTCTGTCTCC
TCTTCCTCCGTTTGTTTTTCCCTTTTTTCTTCTTTCCCCCTTCTTTTTTC
CTCTTCCTGTTTCTTTATTTTTATTCCTCTTTTTTTTTCCCCCTTTTTTT
CATTTCCCCCTTCTCTTTTTTCCTTTGTGTCTGTTTCTNTTCTCCCTATT
ACATTTTTTTATTACGCCCACCATATTTCCTATGTTTTTTTTTCTCTTTT
ACTTTTAGATTTTTTATTTTCG

ATTTTCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTGCTCCTCCTCTCACCGA
TTTCCCACCTCAGTGCAACCTGAGAGGAGCTCAGAAGCTCAGATGCTTAG
TCACAACTCCTGCTTGTTTGATGGTGATGCCACAGAGAGGGACTGGCAAG
GTATGTTGTCTACAGGAGTCATATGACAGCTGTGCGGTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTAAAAACA
GGGTCTCATTATGTAGCTCTGGCTGGTCTGGAACTCACTGTGTAAAGCAG
ATTGTCTTCCAACTCAAAGATCCACTGCCTCTGCCTCCTGACTGCTACTA
TTAAAGATGTGGACTATCGCTGGGCGTGGTGGCGCACGCCTTTGATCCCA
GCACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGG
TCTACAAAATGAGTTCCAGGACAGCCAGGGCTATACACAGAAACCCTGTC
TCGAAAAACCNNNNTNTNTTTAGTATAAAAAAAAAAAAAGATGTGGACTA
TCTCAGGGAAAAGGGAAAGCCTGGGGTTTTCAGGACCAACAGTGAAATCT
CTTGTAGCACACAGCTGTCCTCCCTAGAAACAACGTTTCAGTCCAGCTCA
AAATAGAAATTTTTAATTTAACCATTTTTGTTTTGATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no489_p01.g1 MSMg01no489_p01.g1 CHROMAT_FILE:
MSMg01no489_p01.g1 PHD_FILE: MSMg01no489_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:22 2005
         (481 letters)



>mm_chr1_172958765_172959645
          Length = 881

 Score =  685 bits (354), Expect = 0.0
 Identities = 358/360 (99%), Gaps = 2/360 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgctcctcctctcaccgatttcccacctcagtgcaacctgagaggagctcagaagctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 tttgctcctcctctcaccgatttcccacctcagtgcaacctgagaggagctcagaagctc 299

                                                                       
Query: 61  agatgcttagtcacaactcctgcttgtttgatggtgatgccacagagagggactggcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agatgcttagtcacaactcctgcttgtttgatggtgatgccacagagagggactggcaag 239

                                                                       
Query: 121 gtatgttgtctacaggagtcatatgacagctgtgcggttctctctctctctctctctctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gtatgttgtctacaggagtcatatgacagctgtgcggttctctctctctctctctctctc 179

                                                                       
Query: 181 tctctctctctctctctctctctctctctttttaaaaacagggtctcattatgtagctct 240
           |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||
Sbjct: 178 tctctctctctctctctctctctctct--ttttaaaaacagggtctcattatgtagctct 121

                                                                       
Query: 241 ggctggtctggaactcactgtgtaaagcagattgtcttccaactcaaagatccactgcct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 ggctggtctggaactcactgtgtaaagcagattgtcttccaactcaaagatccactgcct 61

                                                                       
Query: 301 ctgcctcctgactgctactattaaagatgtggactatcgctgggcgtggtggcgcacgcc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  ctgcctcctgactgctactattaaagatgtggactatcgctgggcgtggtggcgcacgcc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 22
Number of successful extensions: 22
Number of sequences better than 10.0: 1
Number of HSP's gapped: 17
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space:   410241
Effective search space used:   410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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