Query= MSMg01no490_b18.b1 MSMg01no490_b18.b1 CHROMAT_FILE:
MSMg01no490_b18.b1 PHD_FILE: MSMg01no490_b18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:36 2005
(687 letters)
>mm_chr1_43302538_43303624
Length = 1087
Score = 1236 bits (639), Expect = 0.0
Identities = 675/687 (98%), Gaps = 1/687 (0%)
Strand = Plus / Plus
Query: 1 ttatcttcccctttcagcatgataattaattattttgaaatgtctttcaatttcaatatt 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttatctccccctttcagcatgataattaattattttgaaatgtctttcaatttcaatatt 260
Query: 61 ttttattacaactacttttcctatcggtttcgtttgctacttttatgttacagagttttc 120
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttattacaactactttaactatcggtttcgtttgctacttttatgttacagagttttc 320
Query: 121 ttaaatccttggtctttgtaggaatacctctttttcctcaaagtcccagcaacttttact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttaaatccttggtctttgtaggaatacctctttttcctcaaagtcccagcaacttttact 380
Query: 181 cattctttataatcccaaatatcctttaaaaagaaagtcaagttacattttttgttattt 240
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 381 cattctttataatcccaaatatcctttaaaaagaaagtcaagttaca-tttttgttattt 439
Query: 241 ttatttaagattaattaaatattaaattcctttactgtatttaaaaagtattttaagagc 300
||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 ttattcaagattaattaaatattaaattcctttactgtatttgaaaagtattttaagagc 499
Query: 301 taaaagttccatttcctgaagtttgaagaatataattttaggacacaactctaaagtaat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 taaaagttccatttcctgaagtttgaagaatataattttaggacacaactctaaagtaat 559
Query: 361 ttttaaaataactatttctggcctgaaccttgtagagggagggggtcactcttgtgtttg 420
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttttaaaatacctatttctggcctgaaccttgtagagggagggggtcactcttgtgtttg 619
Query: 421 gggtggggtcactcttgcaactataacacttgggaggttgagataggagggttgcttcaa 480
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 620 gggtggggtcactcttgcaactataacacgtgggaggttgagataggagggttgcttcaa 679
Query: 481 atttctgggcagcctgaaccacatagagagatcagcataaactacagagctagatgatca 540
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atttctggacagcctgaaccacatagagagatcagcataaactacagagctagatgatca 739
Query: 541 acaacagaaggaatgaatgactgaatacaaatattcctggctgatttattgttttccagt 600
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 740 acaacagaatgaatgaatgactgaataaaaatattcctggctgatttattgttttccagt 799
Query: 601 gttaggaatcaaactcggggcctaaagaatgctagataaattatctatgaattatgtaca 660
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 800 gttaggaatcaaactcggggcctaaagcatgctagataaattatctatgaattatgtaca 859
Query: 661 catgcttttttatgacattttaatctt 687
|||||||||||||||||||||||||||
Sbjct: 860 catgcttttttatgacattttaatctt 886
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no490_b18.g1 MSMg01no490_b18.g1 CHROMAT_FILE:
MSMg01no490_b18.g1 PHD_FILE: MSMg01no490_b18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:36 2005
(592 letters)
>mm_chr1_43492778_43493764
Length = 987
Score = 1033 bits (534), Expect = 0.0
Identities = 572/586 (97%), Gaps = 5/586 (0%)
Strand = Plus / Minus
Query: 3 cagcattctccttctcaagacttattccttactcacccctacaaagtccttttgcaacaa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 897 cagcattctccttctcaagacttattccttactcacccctacaaagtccttttgcaacaa 838
Query: 63 gtatcacagtcacacgttcctgagattaagggaggggtgcctttgaggggtcatgactgg 122
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 837 gtatcacagtcacaagttcctgagattaagggaggggtgcctttgaggggtcatgactgg 778
Query: 123 agcatccctcttggggcagagcaacactggagaagcttctgggaggagctgggatagaat 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 777 agcatccctcttggggcagagcaacactggagaagcttctgggaggagctgggatagaat 718
Query: 183 gaggatgtcacagggacactaagtgagaggacaggagggtgtgctggctcaggaatggga 242
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 717 gagtatgtcacagggatactaagtgagaggacaggagggtgtgctggctcaggaatggga 658
Query: 243 aggttaaagaagataccttagtggggatacttgctgcagctgcttcccccatagcatcat 302
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agg-gaaagaagataccttagtggggatacttgctgcagctgcttcccccatagcatcat 599
Query: 303 gagctaggggaagcgaagacacttcccttcgtaacttatgagaaacccacttccaaccat 362
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 598 gagctaggggaagcgaagacacttcccttcataacttatgagaaacccacttccaaccat 539
Query: 363 gggttaaacattctatcccagcacctcttggaggaggtcaaggatgcccacggtttttta 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 gggttaaacattctatcccagcacctcttggaggaggtcaaggatgcccacggtttttta 479
Query: 423 accaaagaagtgacacaattaaaaagatatttgggtcataaccacaaaattataggaaat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 accaaagaagtgacacaattaaaaagatatttgggtcataaccacaaaattataggaaat 419
Query: 483 gcagaagacagcaaagcatccatcataaccaaaacaaagaactctctccaaagtgccctc 542
||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 418 gcagaagacagtaaag--t--atcataaccaaaacaaagaactctctccaaagtgccctc 363
Query: 543 cccgaggggcttcaggaagaagatatagttttaaaggcttttgaga 588
|| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 362 tccaaggggcttcaggaagaagatatagttttaaagacttttgaga 317
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 987
Length adjustment: 10
Effective length of query: 582
Effective length of database: 977
Effective search space: 568614
Effective search space used: 568614
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
