BAC Information

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BAC

Clone NameMSMg01-490C18
Chromosome1 (Build37)
Map Location 164,165,651 - 164,339,145
singlet/doubletdoublet
Overlap geneDnm3
Upstream geneEG620839, Prdx6, Tnfsf4, Tnfsf18, EG435650, LOC100039623, LOC269134, Fasl, AI848100, EG665109, Pigc, LOC100039703, Dnm3os
Downstream gene5630401D24Rik, Vamp4, LOC435651, Myoc, Bat2d, Fmo4, Fmo1, Fmo2, Fmo6, Fmo3, 4921528O07Rik, Prrx1, LOC100039597, Scyl1bp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490C18.T7 (MSMg01no490_c18.b1)MSMg01-490C18.TJ (MSMg01no490_c18.g1)
ACCAG568474AG568475
length760769
length of high quality
(start - end)		660 (74 - 733)364 (80 - 443)
definitionCHROMAT_FILE: MSMg01no490_c18.b1 PHD_FILE: MSMg01no490_c18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:41 2005CHROMAT_FILE: MSMg01no490_c18.g1 PHD_FILE: MSMg01no490_c18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:13:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,338,486 - 164,339,145)(164,165,651 - 164,166,011)
sequence
NNAATCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTCATTTGCATTTTAGCACTTACAAAATGATGTTCATAGA
GAAAAATTTGCTTAGTTTTATCTTTGTGACTCTCCACTAAGAACATCAGT
GTCTCTGGTGGCTCATGCTTTGAAACATTTCCTCTGACCCGTGTTTATTT
AATAAGTTGTTGTGTGTTGAAATTTCCTTGTATTGAAGTTCTTTTTGAAG
CTTCTGTGTTTCTCATGTACCAGTGTGACCATGGAGTTGATGAGCAAACC
TGGCAAACACTAGGGTCTCCTATGAGTTTACCCCTCCCATTAAGTATTAT
AAGTATTCACCACTGAGGCTGGGTCCTGGGTGTCTTGAATTCTAACTTTT
AGATGATCCTACAACTGTTTTGAGACACACTCTCACTGAATCACAGAGTC
AAAGGTTTATTTTGAATAGAATTCTATGACATTCTCTCTACAGTTTCGAG
GCACTGTAAATATGCTTAAAAAACTATGATATAAGCAGGGCCTGAGGCCA
GAGGATTGCATGTTCAAGACCTGTCTGGGCTACAGAGTGAGTTTAAATTT
AGTTTGAGCAATGTAGTTAGACCCTATTGCAAAATAAAATGTCACTAGAA
GGATGCAGATATATACAGGTCAGCAGGAGACCTGTACATTACACAATACA
CCCAGTGCCTTCCAAGTTCAATTCCCAATATACAGCAACAATAAGAGAAA
ACACCAACCN

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTGAGAATACCCATGAGTTA
AAAGGGCACCATAGAAGGCTGGAAACGAAATCAGAAAGAGAGGTAATAAG
GTCATAGAAGTCAAGGAAGATAGAATCTCAAATCTATCAGCCTCAGTACG
GAGGGTGGGCACTGATGTCCAACATCTGGATTTTAGCTATGCCAGTTTCA
GTGTGGCCATGGGATGGGCAGGGAGAATTTACTGGGATGGACAGAACGAA
GAATAAGCATGGACAAAACAGATGAAGAGAAATCGCCCCAGAGAAGTTAA
AACCAGCACAGGTCCTGGGATCAACGAGATAGAGGGTTTTTTGTTTGTTT
GTTTGTTTGTTTTTTGTTTTGGGTTTTTTAGGGTTTTTTGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTNNNNNNNNNNNNTNNNNNNNNNNNNNNNNTNN
NNNNNTNNNNNTNTTTNNNNNNTTTTTTTNTTTTTTTTTTTTTTTTTTTT
TTTTTTNTNTTTTTTTTTNTTTTTTTTTTTTTTTNTTTTTTTNNTTTNTT
TTTNTNNTNTTTTTTTTTTTTTTTTTTNNNTTTTTTTTNNNNTTTNNTTT
TTTTTTTTTTNTTTTTTTTTTTTTTNTNNTTTTTTTTTTNTTTTTTTTNT
TTTTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_c18.b1 MSMg01no490_c18.b1 CHROMAT_FILE:
MSMg01no490_c18.b1 PHD_FILE: MSMg01no490_c18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:41 2005
         (660 letters)



>mm_chr1_164338478_164339537
          Length = 1060

 Score = 1245 bits (644), Expect = 0.0
 Identities = 656/660 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagcacttacaaaatgatgttcatagagaaaaatttgcttagttttatctttgtgactct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tagcacttacaaaatgatgttcatagagaaaaatttgcttagttttatctttgtgactct 609

                                                                       
Query: 61  ccactaagaacatcagtgtctctggtggctcatgctttgaaacatttcctctgacccgtg 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 608 ccactaagaacatcagtgtctctggtggctcatgctttaaaacatttcctctgacccgtg 549

                                                                       
Query: 121 tttatttaataagttgttgtgtgttgaaatttccttgtattgaagttctttttgaagctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 tttatttaataagttgttgtgtgttgaaatttccttgtattgaagttctttttgaagctt 489

                                                                       
Query: 181 ctgtgtttctcatgtaccagtgtgaccatggagttgatgagcaaacctggcaaacactag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 488 ctgtgtttctcatgtaccagtgtgaccatggagttgatgagcaaacctggcaaacgctag 429

                                                                       
Query: 241 ggtctcctatgagtttacccctcccattaagtattataagtattcaccactgaggctggg 300
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ggtctccgaggagtttacccctcccattaagtattataagtattcaccactgaggctggg 369

                                                                       
Query: 301 tcctgggtgtcttgaattctaacttttagatgatcctacaactgttttgagacacactct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 tcctgggtgtcttgaattctaacttttagatgatcctacaactgttttgagacacactct 309

                                                                       
Query: 361 cactgaatcacagagtcaaaggtttattttgaatagaattctatgacattctctctacag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cactgaatcacagagtcaaaggtttattttgaatagaattctatgacattctctctacag 249

                                                                       
Query: 421 tttcgaggcactgtaaatatgcttaaaaaactatgatataagcagggcctgaggccagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 tttcgaggcactgtaaatatgcttaaaaaactatgatataagcagggcctgaggccagag 189

                                                                       
Query: 481 gattgcatgttcaagacctgtctgggctacagagtgagtttaaatttagtttgagcaatg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gattgcatgttcaagacctgtctgggctacagagtgagtttaaatttagtttgagcaatg 129

                                                                       
Query: 541 tagttagaccctattgcaaaataaaatgtcactagaaggatgcagatatatacaggtcag 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tagttagaccctattgcaaaataaaatgtcactagaaggatgcagatatatacaggtcag 69

                                                                       
Query: 601 caggagacctgtacattacacaatacacccagtgccttccaagttcaattcccaatatac 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68  caggagacctgtacattacacaatacacccagtgccttccaagttcaattcccaatatac 9


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no490_c18.g1 MSMg01no490_c18.g1 CHROMAT_FILE:
MSMg01no490_c18.g1 PHD_FILE: MSMg01no490_c18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:41 2005
         (364 letters)



>mm_chr1_164165451_164166214
          Length = 764

 Score =  698 bits (361), Expect = 0.0
 Identities = 361/361 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgagaatacccatgagttaaaagggcaccatagaaggctggaaacgaaatcagaaaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgagaatacccatgagttaaaagggcaccatagaaggctggaaacgaaatcagaaaga 260

                                                                       
Query: 61  gaggtaataaggtcatagaagtcaaggaagatagaatctcaaatctatcagcctcagtac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaggtaataaggtcatagaagtcaaggaagatagaatctcaaatctatcagcctcagtac 320

                                                                       
Query: 121 ggagggtgggcactgatgtccaacatctggattttagctatgccagtttcagtgtggcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggagggtgggcactgatgtccaacatctggattttagctatgccagtttcagtgtggcca 380

                                                                       
Query: 181 tgggatgggcagggagaatttactgggatggacagaacgaagaataagcatggacaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgggatgggcagggagaatttactgggatggacagaacgaagaataagcatggacaaaac 440

                                                                       
Query: 241 agatgaagagaaatcgccccagagaagttaaaaccagcacaggtcctgggatcaacgaga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agatgaagagaaatcgccccagagaagttaaaaccagcacaggtcctgggatcaacgaga 500

                                                                       
Query: 301 tagagggttttttgtttgtttgtttgtttgttttttgttttgggttttttagggtttttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagagggttttttgtttgtttgtttgtttgttttttgttttgggttttttagggtttttt 560

            
Query: 361 g 361
           |
Sbjct: 561 g 561


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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