Query= MSMg01no490_c23.b1 MSMg01no490_c23.b1 CHROMAT_FILE:
MSMg01no490_c23.b1 PHD_FILE: MSMg01no490_c23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:42 2005
(709 letters)
>mm_chr1_165590199_165591307
Length = 1109
Score = 1270 bits (657), Expect = 0.0
Identities = 694/709 (97%), Gaps = 6/709 (0%)
Strand = Plus / Plus
Query: 4 ggaattctctacaaga---ttaccatcctgatagtgctccgtcatcacatatgtttcaaa 60
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctacaagagagt---catcctgatagtgctccgtcatcacatatgtttcaaa 260
Query: 61 aatatcataggcatggccataccagttacctggtagcaaatgagtaacatacactacagc 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatatcataggcatgaccataccagttacctggtagcaaatgagtaacatacactacagc 320
Query: 121 tacacatgccccaggccttaaaatgacacagaatcactttagttcacattctattaactc 180
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tacacatgccccaggtcttaaaatgacacagaatcactttagttcacattctattaactc 380
Query: 181 aacccagttacatgggcaacctgaacagtgaaagattctaagaaatgcaaaccatctgta 240
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 aacacagttacatgggcaacctgaacagtgaaagattctaagaactgcaaaccatctgta 440
Query: 241 tcccatggacaagaggaatggatatcagcagacaccttacaatcactaccagaagcaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcccatggacaagaggaatggatatcagcagacaccttacaatcactaccagaagcaggt 500
Query: 301 agaaccacgtggtacaggtcgtatgacattggctgagtaactgtgggattatctccagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 501 agaaccacgtggtacaggtcgtatgacattggctgagtaactgtgggattatctccacga 560
Query: 361 tcatccgaaagttccttgaatttgctaagttattgaaaaggcttttacggcccctatatt 420
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tcatccaaaagttccttgaatttgctaagttattgaaaaggcttttacggcccctatatt 620
Query: 421 aagtctcttttgtgtgaattagttaataacagcctaatgtagaaatcaaaaataaaaatc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gagtctcttttgtgtgaattagttaataacagcctaatgtagaaatcaaaaataaaaatc 680
Query: 481 aggcatgtaaaataaagttgaaaattaaaagaactcactggaaggtgcatacaacaggaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 aggcatgtaaaataaagttgaaaattaaaagaactcactggaaggtgcatacaacaggaa 740
Query: 541 ataacaacaataggtttgtgttactttttaaaatcattttcttgtgtataaaatgagacc 600
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 741 ataagaacaataggtttgtgttactttttaaaatcattttcttctgtataaaatgagacc 800
Query: 601 aaaaatacccatgcatcctgcctctcagatttcactgttgtgtgaagcaaatgacttagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 aaaaatacccatgcatcctgcctctcagatttcactgttgtgtgaagcaaatgacttagg 860
Query: 661 aataacgtacactgaggtgcacagtggctcataataacaggactccctg 709
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aataacgtacactgaggtgcacagtggctcataataacaggactccctg 909
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1109
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1099
Effective search space: 768201
Effective search space used: 768201
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no490_c23.g1 MSMg01no490_c23.g1 CHROMAT_FILE:
MSMg01no490_c23.g1 PHD_FILE: MSMg01no490_c23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:13:42 2005
(637 letters)
>mm_chr1_165630707_165631740
Length = 1034
Score = 1178 bits (609), Expect = 0.0
Identities = 629/637 (98%), Gaps = 3/637 (0%)
Strand = Plus / Minus
Query: 1 tttatgtgtccttaatttaaccaagagaaaaattgaaggtgaacattgtcaccagcagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 tttatgtgtccttaatttaaccaagagaaaaattgaaggtgaacattgtcaccagcagct 775
Query: 61 ctgtgtattgttagtcacaggcatgagagaaaactaacaacaaaatcaaaacccaaagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 ctgtgtattgttagtcacaggcatgagagaaaactaacaacaaaatcaaaacccaaagca 715
Query: 121 gtactggtaccaggggaccataaccagatcaagctgtcttaataggttatgttaaagttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 gtactggtaccaggggaccataaccagatcaagctgtcttaataggttatgttaaagttc 655
Query: 181 ggatgtgtttttgaaagaaataagaataaggtttgcttgggggttgcaagcaaggaactt 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 654 ggatgtgtttttgaaagaaataagaataaggtttgcttggaggttgcaagcaaggaactt 595
Query: 241 ccttttctggtctggtccgtataatcatagagccaatggacttccagtgatactcaggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 ccttttctggtctggtccgtataatcatagagccaatggacttccagtgatactcaggtc 535
Query: 301 aggtccttcagttaaaggaagcaatccaaacaggctgcttatgttcatctgcacatctgg 360
||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aggtcgttcagtcaaaggaagcaatccaaacaggctgcttatgttcatctgcacatctgg 475
Query: 361 aagccagtggtctagttggtagtttactttagctcccaaataccttcatagtccagctgc 420
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 474 aagccagtggtctagttggtagtttactatagctcccaaataccttcatagtccagctgc 415
Query: 421 ctccaaatcaactggagaacttcatcagtagagatttcccacctcccatctgcgtttgtt 480
|||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct: 414 ctccaaatcaactggagaacttcatc---agagatttcccacctcccatctgcatttgtt 358
Query: 481 tctaggacgcaggatcagattattgtaactattttaatacgtcattaaactgatccttgg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tctaggacgcaggatcagattattgtaactattttaatacgtcattaaactgatccttgg 298
Query: 541 aaccagttttgttggagaacaccggtagagaaggactcagggacctggtactttttccca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 aaccagttttgttggagaacaccggtagagaaggactcagggacctggtactttttccca 238
Query: 601 attgatgccaattattctgaaatatgatctgacagtt 637
|||||||||||||||||||||||||||||||||||||
Sbjct: 237 attgatgccaattattctgaaatatgatctgacagtt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1034
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1024
Effective search space: 642048
Effective search space used: 642048
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
