BAC Information

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BAC

Clone NameMSMg01-490L09
Chromosome1 (Build37)
Map Location 168,702,288 - 168,702,816
singlet/doubletsinglet
Overlap geneLOC240895
Upstream geneCreg1, Cd247, Pou2f1, LOC665409, Dusp27, Gpa33, Mael, LOC100039795, Tada1l, Pogk, LOC100040287, EG226601, EG226604, 4831428F09Rik
Downstream geneLOC622102, C030014K22Rik, Uck2, LOC100039844, Tmco1, Aldh9a1, Mgst3, Lrrc52, Rxrg, Lmx1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490L09.T7 (MSMg01no490_l09.b1)MSMg01-490L09.TJ (MSMg01no490_l09.g1)
ACCAG568879AG568880
length745744
length of high quality
(start - end)
398 (325 - 722)574 (79 - 652)
definitionCHROMAT_FILE: MSMg01no490_l09.b1 PHD_FILE: MSMg01no490_l09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:22 2005CHROMAT_FILE: MSMg01no490_l09.g1 PHD_FILE: MSMg01no490_l09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXAATTCAATATGATCC
GCGGAANTCNGTGCTTTCAGAGATGAGTATACAACTTCTTTATAAAAATG
TATTAGCATAGGCAAATCTATGGAAAATATTGTGTAACATCAACAATTTT
TATTCTGTTTCCCAGCATCCTCAAAAGGCAATATAGACCATTAATAAACA
ACTGGTTGTCTAATTCAGAACTAAACTGTGATACTTTTTCAGTCTCATAC
CCATAGAGAAACCATGGACAAGCCATGGAACATTTTATTTCACTTTCCTA
ATTGTAGAACTGCAAGATTGTTATAACACCAGATCAGATTTGTTAATACA
TACTAAATACCTTTAGATAATGATATTTTTTCAAGGAATAAAGTATGTTA
GTCATGTATTGAGTCAGGAACTCACTATATAGCCCTGGATGTCCTGGAAC
TCACTTTAACTATTATTTAACATGACCGAGGTCTACATACCTTTCCATCC
CAAGTGACTGGATTAAATGTATGTTCATTTTTGCTGTATTTATCTACTCT
TGATACTATGTAGAAATCATTCTCACTGATAAGTGGGTATTAGCCCAGAA
ACATAGAACACCCAAGATACAATTTGTAAAACATTAGTAAACCAAGAAGC
GGAAAGACCAATGGCTGGATACTTCATCCTCCTTACAATAGGGAACAAAA
TACCCATGAAAAGGAGTTACAGAGACAAAGTTTGAAGCTAAGAAA
CCCCACGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGATGTGGCTGTGTTACTGAC
CAGAAACTGGGCCACCAGATATAGAAGGAGCCCATTACAGAGAGAATAGA
GATAAAAATGAACCATCCAGGTGCATACACCATTGATAATGAGTCTGCAG
CAATGCTTCTGAAAAAAAAAATAAAGCAATGTTATTCCTATTAGTACATT
AAATTCTCAAGATGGACATGAACTGGAAATTTATTACCTACTAATTAAGG
ATTCAGGGTGACTGAATCCTTAGCTCTAAGGTTGGTAATTTATGCATAGG
TCTGAATTATCAAAGGAGCCTCTCATTGGTCCCCATGAAAACGAGTGAAG
CATGCTCTGGTTAATTCTATGCTGCTCTGAAATCATATCTGAAAAACAAA
CAAGAAAGTAGGGAATCATGTATCTCACAATGAAAAAAAAAACAACTGTA
GAGAAGGCAGGATTCCAACATCGGAAAAAAAAAAGTCAATGAGGTCCAGT
TTTGCTCATTTTCTCATGCTATAGAATGTACTCAATGATTATCCTTTAAA
ATACATGTTGATAAGTTTGTTTGAATATATATTGGAAACGTTTATTTTCC
TTGATTGTTCTTTTCAAGAAGATTCTCCAAGATGAGCAACCCTCTCCCTT
GNAAAAGAACTATCTTTGACCAAAGCTTCTCAGGTGCTAGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_l09.g1 MSMg01no490_l09.g1 CHROMAT_FILE:
MSMg01no490_l09.g1 PHD_FILE: MSMg01no490_l09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:22 2005
         (574 letters)



>mm_chr1_168702288_168703258
          Length = 971

 Score =  866 bits (448), Expect = 0.0
 Identities = 518/558 (92%), Gaps = 31/558 (5%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgatgtggctgtgttactgaccagaaactgggccaccagatatagaaggagcccattac 60
           |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 529 ttgatgtggctgtgttcctgaccagaaactgggccaccagatataaaaggagcccattac 470

                                                                       
Query: 61  agagagaatagagataaaaatgaaccatccaggtgcatacaccattgataatgagtctgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agagagaatagagataaaaatgaaccatccaggtgcatacaccattgataatgagtctgc 410

                                                                       
Query: 121 agcaatgcttctgaaaaaaaaaataaagcaatgttattcctattagtacattaaattctc 180
           |||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct: 409 agcattgcttctgaaaaaaaaaa-aaagcaatgttattcctactagtacattaaattctc 351

                                                                       
Query: 181 aagatggacatgaactggaaatttattacctactaattaaggat--tcagggtgactgaa 238
           ||||||||||||||||||||||||||||||||||||||||      ||||||||||||||
Sbjct: 350 aagatggacatgaactggaaatttattacctactaattaa----cctcagggtgactgaa 295

                                                                       
Query: 239 tccttagctctaaggttggtaatttatgcataggtctgaattatcaaaggagcctctcat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 tccttagctctaaggttggtaatttatgcataggtctgaattatcaaaggagcctctcat 235

                                                                       
Query: 299 tggtccccatgaaaacgagtgaagcatgctctggttaattctatgctgctctgaaatcat 358
           ||||||||||||||||||||||||||||||||||                    ||||||
Sbjct: 234 tggtccccatgaaaacgagtgaagcatgctctgg--------------------aatcat 195

                                                                       
Query: 359 atctgaaaaacaaacaagaaagtagggaatcatgtatctcacaatgaaaaaaaaaacaac 418
           |||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||
Sbjct: 194 atctgaaaaacaaacaagaaagtagggaatcatgtatctcacaatgaaaaaaa---caac 138

                                                                       
Query: 419 tgtagagaaggcaggattccaacatcggaaaaaaaaaagtcaatgaggtccagttttgct 478
           |||||||||||||| ||||||||||||| |||||||  ||||||||||||||||||||||
Sbjct: 137 tgtagagaaggcagaattccaacatcgggaaaaaaat-gtcaatgaggtccagttttgct 79

                                                                       
Query: 479 cattttctcatgctatagaatgtactcaatgattatcctttaaaatacatgttgataagt 538
           ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 78  cattttctcttgctatagaatgtactcaatgattatcctttaaaatacatgttgataaat 19

                             
Query: 539 ttgtttgaatatatattg 556
           ||||||||||||||||||
Sbjct: 18  ttgtttgaatatatattg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 971
Length adjustment: 10
Effective length of query: 564
Effective length of database: 961
Effective search space:   542004
Effective search space used:   542004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)