BAC Information

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BAC

Clone NameMSMg01-490N05
Chromosome1 (Build37)
Map Location 128,431,595 - 128,431,896
singlet/doubletsinglet
Overlap geneE030049G20Rik
Upstream geneSlc35f5, Lypd1
Downstream geneLOC383559, Mgat5, LOC667090, Tmem163
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-490N05.T7 (MSMg01no490_n05.b1)MSMg01-490N05.TJ (MSMg01no490_n05.g1)
ACCAG568964AG568965
length763755
length of high quality
(start - end)
302 (429 - 730)643 (76 - 718)
definitionCHROMAT_FILE: MSMg01no490_n05.b1 PHD_FILE: MSMg01no490_n05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:31 2005CHROMAT_FILE: MSMg01no490_n05.g1 PHD_FILE: MSMg01no490_n05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTAATCGTAATGAGGGGC
GGAATTCCATTGGCTGCGAAAACAGGCTTTGCAGCCGTAAATTATCCTAA
TTAAAATAGAGAGATTGTGGGGAGTACTTTTGGAGTTTTGCAAGCTTTAA
TAGACAGTTACATCTTGAACCCCACTCTAGTGAGTGATACCCAAGAGCTT
CATGTTCTTGGGATTCAGCTCTAATGGACCTCCCTCAGAATTGACCTATT
TTTAATAATATCAAGTCCCATCAAATGCGACACAGATGCACAACGCCACC
GAGTGTATCTCTAATCTTCNATTCTATTTCAGTGTCTCATACTGATTGCT
CCAAAATGTTTGAATTAAGTGAAAGGCAAACTTCCTGAAATACATCTTTA
AAATGATTCAAATTTGCACAACCTTTAGCCAAGGAACAGATGTCTCTTTA
ATGCTGTACCTTTGAAAAATTTAAAAACCGTATTATATAAATCCAACTTG
CTGTGACACGATTCTCCTTGCCTTCTTAATCCTTTCTTCAGTGAATATTT
TCATCAGAGCCCTGACAAGGACAAGGAGAAAGGAGGTTTGTGGTCTGGGA
TTATGGTGGAGGAAATTGTTTCACTGAAGGATTTTTAATCTCATCTTCTC
AAATGGAATGGCAGTTTCCTCCCTGTGAACTGTGCTTTAAGTCTTCATTT
TGACAGCTAGTATTCAGCACTCGCCTTGTGTATTGTGGCCACACAATATT
TAAACTATAGAAN
CTCGATGAAGTGGGAGGCCTGGCGGCCGCCTGTTTTCAAAATTGGGGTNG
AACTATAGAAGTATCTAAAAAATTCAGTAAGAATGTTGCTATTCAGTGAC
ATTCAGAACTGCCCCTGGTATTACACTATCACTTTGAGTAAAAGCTAGGT
CACTGCCCTTCACAGGAATCTACCATCACCAAGGAAGAAGGAAGTTTCTG
ACCATAGGAGAAACCAGAATAGATATTTAGAACTATAACTGAGTTACACC
CATATACAGGAATTTACAATGGTTTAGTAAGTAGATTGGGCTGTGGTTTT
AGAGTATTGCATTATTCTTTTTTTGGTTAGCTAGAAAGGAACTCCCTAGT
GAGAACCATGACTTGGGTGTGAAAGCCCTTGCCCTAGGAGTGAAAAATTC
TCACACCTGGCTTCTAAAACTATAGCTGACCTTAGATAGGGCTGACTTTG
TCTCAGTTATTTTTATTGCCCAGTTCCTTCTGATCTTTGAGTTTGCATTC
CTCTGTTCTGTGTAAGAGTCATTAAGCATCCGGTTACCTCATTTGTACTT
TGCAGGTATGTCACCCAACTTCCTTATTGTCTTCTGTATAAAAAGTTTGA
TGCTCAATTTGACAAAATACATTCAGATTCTACACAACCTCTCCTGTGTG
CTTCTGTCTGTCATTCATCCAACGCTTTCCCCACCCGCGACTAGAGACCC
GTTCCACGCAGACAAAGGGGCCCAGAGGGTCTGCGGCAGAAACCCTGTCT
CGAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no490_n05.b1 MSMg01no490_n05.b1 CHROMAT_FILE:
MSMg01no490_n05.b1 PHD_FILE: MSMg01no490_n05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:31 2005
         (302 letters)



>mm_chr1_128431395_128432096
          Length = 702

 Score =  584 bits (302), Expect = e-171
 Identities = 302/302 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccaaggaacagatgtctctttaatgctgtacctttgaaaaatttaaaaaccgtattatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ccaaggaacagatgtctctttaatgctgtacctttgaaaaatttaaaaaccgtattatat 443

                                                                       
Query: 61  aaatccaacttgctgtgacacgattctccttgccttcttaatcctttcttcagtgaatat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 aaatccaacttgctgtgacacgattctccttgccttcttaatcctttcttcagtgaatat 383

                                                                       
Query: 121 tttcatcagagccctgacaaggacaaggagaaaggaggtttgtggtctgggattatggtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tttcatcagagccctgacaaggacaaggagaaaggaggtttgtggtctgggattatggtg 323

                                                                       
Query: 181 gaggaaattgtttcactgaaggatttttaatctcatcttctcaaatggaatggcagtttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gaggaaattgtttcactgaaggatttttaatctcatcttctcaaatggaatggcagtttc 263

                                                                       
Query: 241 ctccctgtgaactgtgctttaagtcttcattttgacagctagtattcagcactcgccttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ctccctgtgaactgtgctttaagtcttcattttgacagctagtattcagcactcgccttg 203

             
Query: 301 tg 302
           ||
Sbjct: 202 tg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 302
Length of database: 702
Length adjustment: 9
Effective length of query: 293
Effective length of database: 693
Effective search space:   203049
Effective search space used:   203049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)