Query= MSMg01no491_a06.b1 MSMg01no491_a06.b1 CHROMAT_FILE:
MSMg01no491_a06.b1 PHD_FILE: MSMg01no491_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:47 2005
(645 letters)
>mm_chr1_41502171_41503215
Length = 1045
Score = 1218 bits (630), Expect = 0.0
Identities = 642/646 (99%), Gaps = 1/646 (0%)
Strand = Plus / Minus
Query: 1 agagatagttcttatctcttcccatgattttcccaaattaactttttcttgttagcccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 agagatagttcttatctcttcccatgattttcccaaattaactttttcttgttagcccct 906
Query: 61 ctcctattgttgttaggga-tttttttcccacttgggaactctagagttagctagaacaa 119
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 ctcctattgttgttagggattttttttcccacttgggaactctagagttagctagaacaa 846
Query: 120 tcttagtccagtcactttgtcatacaaaacaaagacaaactctatacttgatctaaagtt 179
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 845 tcttagtccagtcactttgtcatacaaaacaaaaacaaactctatacttgatctaaagtt 786
Query: 180 gagattagaaatgtcagatgcaggaaaaacagaaatatcagatagtgtcagttaaagtat 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 gagattagaaatgtcagatgcaggaaaaacagaaatatcagatagtgtcagttaaagtat 726
Query: 240 aattcactagtagaagttatgttacttattcataaaataatataaaatataatcttgaat 299
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct: 725 aattcactagtagaagttatattatttattcataaaataatataaaatataatcttgaat 666
Query: 300 tattaattatgcaaatgctatatcattaccatacaataaatatgcaatatataactacat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tattaattatgcaaatgctatatcattaccatacaataaatatgcaatatataactacat 606
Query: 360 aatttatattattcaatgtaaattaataacagacaggtttacatatatatgtaacatatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 aatttatattattcaatgtaaattaataacagacaggtttacatatatatgtaacatatt 546
Query: 420 tattaatcactaactagttatttgtcctttactaattgtattagtcaggatttgtagtcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tattaatcactaactagttatttgtcctttactaattgtattagtcaggatttgtagtcc 486
Query: 480 tgtacaaaacatcataactaagaagcaagttggggaggaaagggtttattcagcttacat 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 tgtacaaaacatcataactaagaagcaagttggggaggaaagggtttattcagcttacat 426
Query: 540 ttccacattgctgttcaccaacaaagtcaggacaggaactcaacagagggcagaaacttg 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttccacattgctgttcaccaacaaagtcaggacaggaactcaacagagggcagaaacttg 366
Query: 600 gagacaggagctgatgcaaaagctatggaggggtgttgattactag 645
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gagacaggagctgatgcaaaagctatggaggggtgttgattactag 320
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_a06.g1 MSMg01no491_a06.g1 CHROMAT_FILE:
MSMg01no491_a06.g1 PHD_FILE: MSMg01no491_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:47 2005
(614 letters)
>mm_chr1_41330141_41331153
Length = 1013
Score = 1060 bits (548), Expect = 0.0
Identities = 590/604 (97%), Gaps = 1/604 (0%)
Strand = Plus / Plus
Query: 7 attcactgggagagagaaggcttccatctactgtgccgcatattgctgggtgggaaaaat 66
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
Sbjct: 207 attcactgggagagagaaggcttccttctactgtgccacatattgctgggtgggaaaagt 266
Query: 67 tttagggtgagcatccccgaagtttctcgcatccaggagagaactaaaatctctaactgg 126
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ttaagggtgagcatccccgaagtttctcgcatccaggagagaactaaaatctctaactgg 326
Query: 127 caagcatgctccagacatggattaaaagatcctgcttattcacccccagctggattgatt 186
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 327 caagcgtgctccagacatggattaaaggatcctgcttattcacccccagctggattgatt 386
Query: 187 ctccatcttttaagtactccttattactataatggaggacaagtcagcattattatgtat 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctccatcttttaagtactccttattactataatggaggacaagtcagcattattatgtat 446
Query: 247 tccaaacaaaaactcagttattttctcactattgaagtatgccaccaaaaatgtacatgt 306
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 447 tccaaacaaaaactcagt-attttctcactattgaagtatgccaccaaaaatgtacacgt 505
Query: 307 tttgttaaattgcaacttcacttgatagtgaagtcttaaaaatgaaagccaaatccttga 366
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 506 tttgttgaattgcaacttcacttggtagtgaagtcttaaaaatgaaagccaaatccttga 565
Query: 367 atttaaattaataaaatgtttaaaaccacccaattagctaataaacaccagagtaacccc 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 atttaaattaataaaatgtttaaaaccacccaattagctaataaacaccagagtaacccc 625
Query: 427 ggagcttgcttagtttgttgtttgctggattactttgatggtatcaaacaaaccaaaaca 486
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 gaagcttgcttagtttgttgtttgctggattactttgatggtatcaaacaaaccaaaaca 685
Query: 487 aacaaaactcctaaatttttgcttgaaatgaaaacttaaggtaataaataagacaaatta 546
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 686 aacaaaactcctaaatttttgcttgaaatgaaaacttaaggtaataaataagacaagtta 745
Query: 547 tacaacagagtttgaatgggtgggataaactgcgctaatataacaaatctttcaggtcac 606
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 746 aacaacagagtttgaatgggtaggataaactgcgctaatataacaaatctttcaggtcac 805
Query: 607 atta 610
||||
Sbjct: 806 atta 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1013
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1003
Effective search space: 605812
Effective search space used: 605812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
