BAC Information

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BAC

Clone NameMSMg01-491A22
Chromosome1 (Build37)
Map Location 111,996,280 - 112,174,024
singlet/doubletdoublet
Overlap geneCdh7
Upstream geneEG666508
Downstream geneLOC100041429, EG626652, Cdh19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491A22.T7 (MSMg01no491_a22.b1)MSMg01-491A22.TJ (MSMg01no491_a22.g1)
ACCAG569141AG569142
length769770
length of high quality
(start - end)		605 (40 - 644)533 (68 - 600)
definitionCHROMAT_FILE: MSMg01no491_a22.b1 PHD_FILE: MSMg01no491_a22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:50 2005CHROMAT_FILE: MSMg01no491_a22.g1 PHD_FILE: MSMg01no491_a22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:14:50 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,996,280 - 111,996,880)(112,173,492 - 112,174,024)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCA
GTGCATTTCACAGTGGCTTTGGCTTGTCCATCTCTATTTTTTAGAGTCTT
AAGATGTTTACAGGGATGTCTAATCAATTGTTACAGCTTGACTTTGAGGT
TCACAAATATAACTTCAAACGTGCTTTAAAAGGGACATTTATTTTCCAAG
GCCCATTTTAGAATAAATTCAAATTGGTACACCTGATCTATTCCCTGGAT
TCATTCAAAAAGATGGCATTTGTGATAAGGTGTAAAATTACTGTGTCCTG
CTGTAGAAATCTCAGCAGAGTACACTAGTATAATTTCCTTGTTTTCATTC
TCTCTACCAAGGTTATCCAGAAAATCAGTGCAGTAGATAAAGATGAGCCA
TCCAATGGACACCAGTTTTACTTCAGCTTAACAACAGACATGACAAATAA
CCACAACTTTTCATTGAAAGATAACAAAGGTAAGGCTAGTTACACCATTG
CAAGCATTAGCTCCTAAGAAAGTCCATTATTTCACTTTGAAATGCTTTTA
TAGGAGAAAAAACAGGAAGTACATTAATTAAAAGTAGTAATTTTTATCCA
TAGAGGAGAAGCTGCTATTTAAATCATTTTAGCACAGAGCCAAATTAGAA
GTGTTAGGTCTCTATCTCTTGCCTGTCTCCTAGGNATTTAGTTCCTCCTT
TATATACCATGCTGATTATCCAAATGNATATGCTTGAAGGTCAGCTAAAG
TCCTTAATAGTACAATGTG

GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTCTTTTTTATGGTAGAGTATGTTCAGACTCT
CAATATCCCATCAATTCTTTGACCTGGTATTTATATTATGTATCTGTTCT
GGACATTAATAACTTTTCTTTCGGACATTAATATAAACAACTATAGTCAT
CCTTATTTTAATGTCATATAATACCAAACTCCATCCAATAGCTTAGTTAG
TTTTTGATGCTGCATTTATCATTTACAACTATATTTTTTTTCTTGCTGGT
GAACATGTCTTATTAAAAAGCAAATACTGTATAACAGAAAGAAAATAGGT
CATGAGGCTATTTGTATGGGTTTAAGTTAGAATTGTTTAGATATACTTAA
TATTAGAAAGATTTGTTAAGAGTCAGCCTAAAATTTCTTATTCTTTATTT
GTTTTCTCTTATCCTTGTTGACAATCCTCACATTAAGATGTATTCAAAAG
TTATAAGATTTTTCATTAGTTACAACACTATGTCTTGTAGAAATTTCTCA
AACTTTTGGGCACCTCAAAATTAATTTTTAGAGTGTTTTTAGTGGCTTGT
GATCCAGGTAACCTTAACTTGAATGTGAATCTCTCTCTCTACATCTGCTT
GTCTTTGCAGATTCAGGGGGNACCTTGTTATACTATGTTATTGATATATC
TGAGAAAAAAATGGTNNGATTTCTGNATATTCTGGTGGNAGCTTCTCTCT
CTGTCTCTGTCTCTGGCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_a22.b1 MSMg01no491_a22.b1 CHROMAT_FILE:
MSMg01no491_a22.b1 PHD_FILE: MSMg01no491_a22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:50 2005
         (605 letters)



>mm_chr1_111996076_111997080
          Length = 1005

 Score = 1154 bits (597), Expect = 0.0
 Identities = 600/601 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgcatttcacagtggctttggcttgtccatctctattttttagagtcttaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgcatttcacagtggctttggcttgtccatctctattttttagagtcttaag 264

                                                                       
Query: 65  atgtttacagggatgtctaatcaattgttacagcttgactttgaggttcacaaatataac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgtttacagggatgtctaatcaattgttacagcttgactttgaggttcacaaatataac 324

                                                                       
Query: 125 ttcaaacgtgctttaaaagggacatttattttccaaggcccattttagaataaattcaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttcaaacgtgctttaaaagggacatttattttccaaggcccattttagaataaattcaaa 384

                                                                       
Query: 185 ttggtacacctgatctattccctggattcattcaaaaagatggcatttgtgataaggtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttggtacacctgatctattccctggattcattcaaaaagatggcatttgtgataaggtgt 444

                                                                       
Query: 245 aaaattactgtgtcctgctgtagaaatctcagcagagtacactagtataatttccttgtt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaattactgtgtcctgctgtagaaatctcagcagagtacactagtataatttccttgtt 504

                                                                       
Query: 305 ttcattctctctaccaaggttatccagaaaatcagtgcagtagataaagatgagccatcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttcattctctctaccaaggttatccagaaaatcagtgcagtagataaagatgagccatcc 564

                                                                       
Query: 365 aatggacaccagttttacttcagcttaacaacagacatgacaaataaccacaacttttca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatggacaccagttttacttcagcttaacaacagacatgacaaataaccacaacttttca 624

                                                                       
Query: 425 ttgaaagataacaaaggtaaggctagttacaccattgcaagcattagctcctaagaaagt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgaaagataacaaaggtaaggctagttacaccattgcaagcattagctcctaagaaagt 684

                                                                       
Query: 485 ccattatttcactttgaaatgcttttataggagaaaaaacaggaagtacattaattaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ccattatttcactttgaaatgcttttataggagaaaaaacaggaagtacattaattaaaa 744

                                                                       
Query: 545 gtagtaatttttatccatagaggagaagctgctatttaaatcattttagcacagagccaa 604
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctagtaatttttatccatagaggagaagctgctatttaaatcattttagcacagagccaa 804

            
Query: 605 a 605
           |
Sbjct: 805 a 805


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 605
Length of database: 1005
Length adjustment: 10
Effective length of query: 595
Effective length of database: 995
Effective search space:   592025
Effective search space used:   592025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no491_a22.g1 MSMg01no491_a22.g1 CHROMAT_FILE:
MSMg01no491_a22.g1 PHD_FILE: MSMg01no491_a22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:14:50 2005
         (533 letters)



>mm_chr1_112173292_112174224
          Length = 933

 Score = 1015 bits (525), Expect = 0.0
 Identities = 531/533 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actcttttttatggtagagtatgttcagactctcaatatcccatcaattctttgacctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 actcttttttatggtagagtatgttcagactctcaatatcccatcaattctttgacctgg 674

                                                                       
Query: 61  tatttatattatgtatctgttctggacattaataacttttctttcggacattaatataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tatttatattatgtatctgttctggacattaataacttttctttcggacattaatataaa 614

                                                                       
Query: 121 caactatagtcatccttattttaatgtcatataataccaaactccatccaatagcttagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 caactatagtcatccttattttaatgtcatataataccaaactccatccaatagcttagt 554

                                                                       
Query: 181 tagtttttgatgctgcatttatcatttacaactatattttttttcttgctggtgaacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 tagtttttgatgctgcatttatcatttacaactatattttttttcttgctggtgaacatg 494

                                                                       
Query: 241 tcttattaaaaagcaaatactgtataacagaaagaaaataggtcatgaggctatttgtat 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tcttattaaaaagcagatactgtataacagaaagaaaataggtcatgaggctatttgtat 434

                                                                       
Query: 301 gggtttaagttagaattgtttagatatacttaatattagaaagatttgttaagagtcagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gggtttaagttagaattgtttagatatacttaatattagaaagatttgttaagagtcagc 374

                                                                       
Query: 361 ctaaaatttcttattctttatttgttttctcttatccttgttgacaatcctcacattaag 420
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 373 ctaaaatttcttattctttatttgttttctcttatccttgttgaaaatcctcacattaag 314

                                                                       
Query: 421 atgtattcaaaagttataagatttttcattagttacaacactatgtcttgtagaaatttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atgtattcaaaagttataagatttttcattagttacaacactatgtcttgtagaaatttc 254

                                                                
Query: 481 tcaaacttttgggcacctcaaaattaatttttagagtgtttttagtggcttgt 533
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tcaaacttttgggcacctcaaaattaatttttagagtgtttttagtggcttgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space:   482729
Effective search space used:   482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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