Query= MSMg01no491_e02.b1 MSMg01no491_e02.b1 CHROMAT_FILE:
MSMg01no491_e02.b1 PHD_FILE: MSMg01no491_e02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:07 2005
(576 letters)
>mm_chr1_59944301_59945276
Length = 976
Score = 1056 bits (546), Expect = 0.0
Identities = 567/580 (97%), Gaps = 10/580 (1%)
Strand = Plus / Minus
Query: 7 gaattccaggtggttctctcactttccaaattttaatttgtctctgattcatattcag-- 64
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gaattccaggtggccctctcactttccaaattttaatttgtctctgattcatattcagtc 562
Query: 65 --------tctctctctctctctctctctctctctctctctctctctgagatgtcaaaag 116
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctctttctctctctctctctctctctctctctctctctctctctctgagatgtcaaaag 502
Query: 117 tccaaagtgctttaaaagttctgggacataaaggaaaatgatgttaaaatgtttgtttcc 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tccaaagtgctttaaaagttctgggacataaaggaaaatgatgttaaaatgtttgtttcc 442
Query: 177 cccttttaaatggcacaggtaatttcctttctgtcttgctgctttctgtttggagcggtg 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccttttaaatggcacaggtaatttcctttctgtcttgctgctttctgtttggagcggtg 382
Query: 237 ttaacaggctgaagaagatcacaaatgagggcattttatgttttactcctgcataggaat 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttaacaggctgaagaagatcacaaatgagggcattttatgttttactcctgcataggaat 322
Query: 297 ttattaagaaagatgcaggggccgaggtagatcaagcctttaattccagcactggggagg 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttattaagaaagatgcaggggccgaggtagatcaagcctttaattccagcactggggagg 262
Query: 357 cagaggcagtaggatcaaggccagcctggtttataaagtgaattccatgacagccagagg 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaggcagtaggatcaaggccagcctggtttataaagtgaattccatgacagccagagg 202
Query: 417 tgacacagagaaaccctgtctcagaaaagaaaaggaaagagaaggagaaaagcaagccac 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgacacagagaaaccctgtctcagaaaagaaaaggaaagagaaggagaaaagcaagccac 142
Query: 477 gggcagatagagtggaattacctggcatgtggcgtgctgctgctttctatgaagttggca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 141 gggcagatagagtggaattacctggcatgtggcgtgctgctgctttctatgaagttggca 82
Query: 537 gctgtcacatccctgtgttgctcagattccttttcaccct 576
||||||||||||||||||||||||| ||||||||||||||
Sbjct: 81 gctgtcacatccctgtgttgctcagtttccttttcaccct 42
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_e02.g1 MSMg01no491_e02.g1 CHROMAT_FILE:
MSMg01no491_e02.g1 PHD_FILE: MSMg01no491_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:07 2005
(485 letters)
>mm_chr1_59754887_59755769
Length = 883
Score = 903 bits (467), Expect = 0.0
Identities = 480/485 (98%), Gaps = 2/485 (0%)
Strand = Plus / Plus
Query: 1 ttaaaagacaatatctgaaaacccacaacggtgaattttcaagaaaacttatttttcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttaaaagacaatatctgaaaacccacaacggtgaattttcaagaaaacttatttttcatt 260
Query: 61 taatgtgaatgtttttataggaaaaattgaatctcagctgtatccatagtcctgttgtta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taatgtgaatgtttttataggaaaaattgaatctcagctgtatccatagtcctgttgtta 320
Query: 121 atgaacttatgagaggaatccgatcacaaatggatggcttgattcctggggtagaaccac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgaacttatgagaggaatccgatcacaaatggatggcttgattcctggggtagaaccac 380
Query: 181 gtgagatggcagccatgtgtcttggattggcccacaggtaagtacagaaaagttaaatgt 240
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 381 gtgagatggcagccatgtgtcttggattggcccacaggtaagtacagaa--gttaaatgt 438
Query: 241 atgcttactcatatacatacacatatttatatacatctgtcctaaaagtgtgtaagtatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgcttactcatatacatacacatatttatatacatctgtcctaaaagtgtgtaagtatt 498
Query: 301 aatgtcagggagatgctgctgttgccttcaagaaaaaacttgctcagcatcaataaagct 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 499 aatgtcagggagatgctgctgttgccctcaagaaaaaacttgctcagcatcaataaagct 558
Query: 361 gataagtggtaaaaatacgattattagacccagtgtattctttttggtttttccaggcag 420
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 gataagtggtaaaaatacaattattagacccagtgtattctttttggtttttccaggcag 618
Query: 421 gatttgtctgtatagctctggctgtcctggaactcggtctgtagaccaggctggtcttga 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 619 gatttgtctgtatagctctggctgtcctggaactcggtctatagaccaggctggtcttga 678
Query: 481 attca 485
|||||
Sbjct: 679 attca 683
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 485
Length of database: 883
Length adjustment: 10
Effective length of query: 475
Effective length of database: 873
Effective search space: 414675
Effective search space used: 414675
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
