Query= MSMg01no491_f11.b1 MSMg01no491_f11.b1 CHROMAT_FILE:
MSMg01no491_f11.b1 PHD_FILE: MSMg01no491_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:14 2005
(634 letters)
>mm_chr1_74071288_74072321
Length = 1034
Score = 1133 bits (586), Expect = 0.0
Identities = 622/634 (98%)
Strand = Plus / Plus
Query: 1 ggctcaaggaatgaagtttcaaggctgtgctgccgtctcagaataaaaggtattgcacat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggctcaaggaatgaagtttcaaggctgtgctgccgtctcagaataaaaggtattgcacat 260
Query: 61 gccagtgaggcggcgctgttctggagtgctcacacagcttgtgcaaaggtaccgcccagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 gccagtgaggcggcgctgttctggagtgctcacacagcttgtgcaaaggtacagcccagt 320
Query: 121 aggcatctgggaaatcggcacctgatgcaggcgccaggtctctgtcctgagtgcaggggc 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 aggcatctgggaaatcggcacctgatgcaggcgccaggcctctgtcctgagtgcaggggc 380
Query: 181 tgagcccactctcaagcggtctctgaaatgcagacatcaggaaagccccaatccttctgg 240
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgagcccactctcaagcagtctctgaaatgcagacatcaggaaagccccaatccttctgg 440
Query: 241 ggtcaggcatttgttgcagggggtggagggttgatgggaggcacagcctatggcacacag 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 441 ggtcaggcatttgttgcagggggtggagggttgacgggaggcacagcctatggcacacag 500
Query: 301 atgacttccaggaagttcctagaagctggtccagggacaagctatggactgtagggggta 360
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||
Sbjct: 501 atgacttccaggaagttcctagaagctagtccagggacaagctatggactgtggggggta 560
Query: 361 gggggcgcagggggcggggcagaggaagtgacaggcccaagaaacagacccaagtagtca 420
||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 561 gggggcgcagggggcagggcagaggaagtgataggcccaagaaacagacccaagtagtca 620
Query: 421 ctcaggcaatagtgactgagctcccagctgaggagaacgaggggaaagagaacggggccc 480
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 621 ctcaggcaatagtgactgagctcccagctgaggagaaagaggggaaagagaatggggccc 680
Query: 481 caaccctggacggaagttgtggcctcaggagaagacaggcatgtaaacagacttataaat 540
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 681 caaccctggacggaagttgtggcctcaggaggagacaggcatgtaaacagacttataaat 740
Query: 541 ctgcccggaactgcgacagtggaagtttgaagaggccgtgcttgctctaggatgactgtc 600
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 741 ctgcccggaactgcgacagtggaagtttgaagaggctgtgcttgctctaggatgactgtc 800
Query: 601 catcagtttttcccaaggttacacccagaaagga 634
||||||||||||||||||||||||||||||||||
Sbjct: 801 catcagtttttcccaaggttacacccagaaagga 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no491_f11.g1 MSMg01no491_f11.g1 CHROMAT_FILE:
MSMg01no491_f11.g1 PHD_FILE: MSMg01no491_f11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:14 2005
(594 letters)
>mm_chr1_74221301_74222294
Length = 994
Score = 816 bits (422), Expect = 0.0
Identities = 533/590 (90%), Gaps = 34/590 (5%)
Strand = Plus / Minus
Query: 5 ggttgccaatctagatagtaaatagaaagtcttcagtgtgtgtgtaatatgctggaatat 64
|||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||
Sbjct: 993 ggttgccaatctaggtagtcaatagaaagtcttcagtgcgtgtgtaatatgctggaatat 934
Query: 65 tgaaatatggtattgaaaaatgtatggaccactattagataaaagaattttttgagttca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 tgaaatatggtattgaaaaatgtatggaccactattagataaaagaattttttgagttca 874
Query: 125 gtatccttatcaatgatatgggggctagggatagaggactgttggcttttatcagaagtc 184
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 873 gtatctttatcaatgatatgggggctagggatagaggactgttggcttttatcagaggtc 814
Query: 185 atttcatgtgtggtggcacattcctttaatcccagtactcaggaggcagaggcaggtgga 244
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 813 atttcacgtgtggtggcacattcctttaatcccagtactcaggaggcagaggcaggtgaa 754
Query: 245 tatctgtatatcagcctggtctatagagtgaattctaggacagtcaaggcaaacacacac 304
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 753 tctctgtatatcagcctggtctatagagtgaattctaggacagccaaggcaaacacacaa 694
Query: 305 acacacacacacacacacacacacacacacacacacacacacacacacacacacacccct 364
| | ||||||||||| ||||||||||||||||||
Sbjct: 693 a-a---------------------------acacacacacatacacacacacacacccct 662
Query: 365 tctcactccccactcccgtaaaagtaatttcacagctcaacaatagtttatttaaaaata 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tctcactccccactcccgtaaaagtaatttcacagctcaacaatagtttatttaaaaata 602
Query: 425 aaaaggagaatttattgaatgaaaataaatacaccacatattgtcttagtcagggtttct 484
|||||||||||||||||||||||||||||||||||| |||| | ||||||||||||
Sbjct: 601 aaaaggagaatttattgaatgaaaataaatacaccatatat---c---gtcagggtttct 548
Query: 485 atccctgcacaaacagcatgatcaagaagcaagttggggaggaaagggtttatttggctt 544
|| |||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||
Sbjct: 547 attcctgcacaaacatcatgatcaagaagcaagttggggtggaaagggtttattcagctt 488
Query: 545 acacttccatactgctgttcatcaccaaaggaagtcaggactggaactca 594
||| ||||| | |||||||||| || |||||||| |||||||||||||||
Sbjct: 487 acatttccacattgctgttcataactaaaggaagccaggactggaactca 438
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 594
Length of database: 994
Length adjustment: 10
Effective length of query: 584
Effective length of database: 984
Effective search space: 574656
Effective search space used: 574656
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
