XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAATGAA
ATTCCAAGTTGACAGGAAAAAAAATGACACTGGCAATCATGGCTTAAAAG
AATATTATCTTTAGAAAAAAAGGAACAAAAAAAAGTCTTTAAATCTTGAA
AAGTAGAAAGTAATAAATCCTCATGAACTGCTGTACATGTTCTTCCATTA
AGAACTAATATTGTTTTCAATATAGGCCCTCCCCACAAATAACATACATT
TTTATTTGCAAAATTTAGGCATATTATTTATAGAAAAGATAAATATTTTA
AAACCATAGTCATGGGAGTATCATAAATAGATTTATAATATTAATTCTTT
AAAGCCATCAAATATACAGCCAAATAGTCCAAGCCTCTTAATTGGTTGGT
AATTTTTTAATTTATCTACATAGATTCTTCTTTTTAATGGAGACCTTTCA
AATGGCTCCTAACATGGAGTTTGCTAAGAGACACAGCATTATGTACTGAA
GAGAGTTTAGTCTGTCTGATCAAATAAAAATGTCTCTTTTTATTATTTAA
TATTTGAAATCATACAAATAAAAGGTAGAAATGTGGAATTATCTATAATC
AAATGCTTTTAAATATTGACATATTTTTAAGTATTTATAAGGTTTGTCTT
TAAAACTTAGCTCTTTTTAAACCCCATAGAATATATAAACTATTTTTAAT
GTAGTAAACTGTAAATGTGGTGATCTACTGAATTAGATAACATAGGAT

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTGGGAGGGAGTGACCAGGAACAGGGCAGTGAGTGGGA
TGCAAAGTGAAAAAATAAAATTAATAATAATCATAAACAATTATTTGACT
AAAGTTCAGGTAATTGGAGAAAGAAGTTGAAGAAGCTATGGTGAGATGGA
AAGACCTCCCATGCTCACAGACCAGTAAGCTTACCATAGTAAAAATGTCC
ATCCTACAAAAGCAATCTACAGATTCATTTCAATTCCCATCAAAATTCCA
ACACAATTCACAGATCTTCAAAGGATAATTCACAGTTTCATGCGGAAACA
CAAAAAAACCAAGGAAAGCTAAAACAATACTGAATTATAGAAAAACTCTT
AGAGGTATCACCATCTCTGGTCTCAAAATTTACCACAAAGCTATAATAAT
AAAAATATCATGGTATTGGAACAAAAATAGACACATTGATCAATGAAATC
AATTTGAAGACCTAGACACAAATCCACACATCTATGGACACCTGATATTT
TTTATTAAAAAGCTAGAAATATACTATGGGAAAAGAAAACATCTTCAACA
AATGGGTCAAACTGGATGGCTGCATGTGAAGAATGGAAATACATCTATGC
TTATCATACTTGGACAAAAGTCAACTCCAAATGGACCAAAGACCTCACCA
GAATACCAGATACATTGAAACTAATAGAAGAGAAAGTGAGGA

Query= MSMg01no491_l15.b1 MSMg01no491_l15.b1 CHROMAT_FILE:
MSMg01no491_l15.b1 PHD_FILE: MSMg01no491_l15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:43 2005
         (713 letters)



>mm_chr1_5706000_5707114
          Length = 1115

 Score = 1228 bits (635), Expect = 0.0
 Identities = 685/713 (96%), Gaps = 22/713 (3%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaatgaaattc--caagttgacaggaaaaaaaa--tgacactggcaatcatggc 60
           ||||||||||||||  |  ||||||||||||||||||||  |||||||||||||||||||
Sbjct: 205 gaattcaaatgaaag-caacaagttgacaggaaaaaaaaaatgacactggcaatcatggc 263

                                                                       
Query: 61  ttaaaagaatattatctttagaaaaaaaggaacaaaaaaaagtctttaaatcttgaaaag 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 ttaaaagaatattatctttagaaaaaaaggaacaaaaaaa-gtctttaaatcttgaaaag 322

                                                                       
Query: 121 tagaaagtaataaatcctcatgaactgctgtacatgttcttccattaagaactaatattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tagaaagtaataaatcctcatgaactgctgtacatgttcttccattaagaactaatattg 382

                                                                       
Query: 181 ttttcaatataggccctccccacaaataacatacatttttatttgcaaaatttaggcata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttttcaatataggccctccccacaaataacatacatttttatttgcaaaatttaggcata 442

                                                                       
Query: 241 ttatttatagaaaagataaatattttaaaaccatagtcatgggagtatcataaatagatt 300
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 443 ttatttatagaaaagataaatatttttaaaccatagtcatgggagtatcataaatagatt 502

                                                                       
Query: 301 tataatattaattctttaaagccatcaaatatacagccaaatagtccaagcctcttaatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tataatattaattctttaaagccatcaaatatacagccaaatagtccaagcctcttaatt 562

                                                                       
Query: 361 ggttggtaattttttaatttatctacatagattcttctttttaatggagacctttcaaat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggttggtaattttttaatttatctacatagattcttctttttaatggagacctttcaaat 622

                                                                       
Query: 421 ggctcctaacatggagtttgctaagagacacagcattatgtactgaagagagtttagtct 480
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ggctcctaacgtggagtttgctaagagacacagcattatgtactgaagagagtttagtct 682

                                                                       
Query: 481 gtctgatcaaataaaaatgtctctttttattatttaatatttgaaatcatacaaataaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gtctgatcaaataaaaatgtctctttttattatttaatatttgaaatcatacaaataaaa 742

                                                                       
Query: 541 ggtagaaatgtggaattatctataatcaaatgcttttaaatattgacatatttttaagta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ggtagaaatgtggaattatctataatcaaatgcttttaaatattgacatatttttaagta 802

                                                                       
Query: 601 tttataaggtttgtctttaaaacttagctctttttaaaccccatagaatatataaactat 660
           |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 803 tttataagttttgtctttaaaccttagctctttttaaaccccatagaatatataaactat 862

                                                                
Query: 661 ttttaatgtagtaaactgtaaatgtggtgatctactgaattagataacatagg 713
           |||||||||                ||||||||||| ||||||||||||||||
Sbjct: 863 ttttaatgt----------------ggtgatctactaaattagataacatagg 899


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1115
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1105
Effective search space:   776815
Effective search space used:   776815
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)