BAC Information

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BAC

Clone NameMSMg01-491O09
Chromosome1 (Build37)
Map Location 23,865,957 - 23,866,411
singlet/doubletsinglet
Overlap geneSmap1
Upstream geneEG665725, LOC665731, 4933415F23Rik, Rn4.5s-ps4, EG623356, Ogfrl1, LOC665782, B3gat2
Downstream gene1110058L19Rik, 4921533L14Rik, LOC665808, Col9a1, Col19a1, LOC100040475, LOC665829, Lmbrd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-491O09.T7 (MSMg01no491_o09.b1)MSMg01-491O09.TJ (MSMg01no491_o09.g1)
ACCAG569785AG569786
length744748
length of high quality
(start - end)
458 (63 - 520)195 (113 - 307)
definitionCHROMAT_FILE: MSMg01no491_o09.b1 PHD_FILE: MSMg01no491_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:57 2005CHROMAT_FILE: MSMg01no491_o09.g1 PHD_FILE: MSMg01no491_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:15:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTAAACGACTCACAATTTCATAAGAGGGCGGAANNCCCACAGGTTC
TGATATGAACACACCCATACATACCAACAAAATGATCAAATAAGTAGAAA
TATAAGCATTTCTGTGGTCTCTGCTACTTGGGAAGTTGAGCCAGGATGCC
TGCAAGTTGAAGGCCTACCTGAGCAACTTAGTGAGACTTTGACTCAAAAT
AAAAAGTGAAGTAGGTGTTGGAAGTGTAGCTTAGTGATATCCTTGGCCTG
TCATATAAGATGATAGGTGCAGCCCCAAGTACCAAGGGGGAGAAAGGCAT
AATTTATCCTTTTAGAGGTTGAATTTCTGTATTCACTATTCAAGGGTCTT
GTTGTATAGAAATTTCTACTGTAAGTTCAAAGACCATGCCTACCTGTTTA
AAAAATAATAAATGCTTTAGGATTCCTTATACTAACTTCATGAAAATTAT
GCATAAGTGTAAGTGGGACTTAAATATTCGTTTAATAAACTAATCAATGA
ATCCAATGATTTACTTCTAAGCTGCCTATGAAAGAAGAGCATCAACTTGA
GCCTAAGAAAAGCACCAGCCCATAAAATGCTGCAGAGCCCACTATTGATC
TTCTAGGACTTGGTAAGTGATGGAAATGCCAAACAACTGATTTTTACTTG
ATATTTACATGTATGTCCAATTCTTCAGTATTGTATTCAACAGGTTGTGT
TGTGTGAAAGGATCTGATGTGTTCTCATAAAAGCCTTTGAATTT
AGGTCTGGAGGNCGCCGGGCCTCCAAATATGGGNGACACNATAGAAGGAC
TTCTAAACAACGGGGACAACTGGGTGTCCAGCAATCAAATGCCCTAAGTG
CCCCTTACCTAGTGTCACCTAGTGTCAGGTTGCTTTCCTAGCCTCATGAT
TATGACTATACCCTTCCCGTTTAAAAAGTATTTGCCACCCTTCATTTCTA
CTCTTTCCTTGTATTTAAAAAAAAAAAAAAAACAATAATTGTTCTCTAGA
CTCTCATTCCATGGGACTTGCTGTTCATGTTTCCCCAGAGAAATAAGCTT
GGTTTATTGTTTCTTTTGGATTTTATTATACCCATGATTAGGGTTATCAA
ATGATTGCTTTAAAGCTGGACTTTTATTTTAAAGTTAAGTTGTTTCTTTG
CTCTCCCCTCTAAAAGGAGGACTTGTGTTTTGAAGCAGACCTTTTAACTC
TAAATGCTTGTTTATTTTTAAGCCAAGTCTTTCTTGCCCAACTCTGAAAT
CACTTTACCTATGACGCGTCATCTTGTTTAAGAAAAATAGTGCACATTGC
TGCTAATTGACATTTGAGGGGGGCTAAGCTGGACAAGAGGAAGGATTGCT
TCTGTGCCAGCATTCAGCCTGTTGGCACGAGGCGTTAAAGGATTATAAAA
ATTGGCACATGCATGCAGGAAGACAATTCAGATACAGTCTCCTTTGAGAC
TTCCCCTGATGAAAGAAGGCTTGTGTGAAGGTATTTAAGACAGAAGGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no491_o09.b1 MSMg01no491_o09.b1 CHROMAT_FILE:
MSMg01no491_o09.b1 PHD_FILE: MSMg01no491_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:15:57 2005
         (458 letters)



>mm_chr1_23865614_23866471
          Length = 858

 Score =  818 bits (423), Expect = 0.0
 Identities = 448/457 (98%), Gaps = 4/457 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccatacataccaacaaaatgatcaaataagtagaaatataagcatttctgtggtctct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 acccatacataccaacaaaatgatcaaataagtagaaatataagcatttctgtggtctct 739

                                                                       
Query: 61  gctacttgggaagttgagccaggatgcctgcaagttgaaggcctacctgagcaacttagt 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 738 gctacttgggaagttgagccaggaggcctgcaagttgaaggcctacctgagcaacttagt 679

                                                                       
Query: 121 gagactttgactcaaaataaaaagtgaagtaggtgttggaagtgtagcttagtgatatcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 678 gagactttgactcaaaataaaaagtgaagtaggtgttggaagtgtagcttagtgatagcc 619

                                                                       
Query: 181 ttggcctgtcatataagatgataggtgcagccccaagtaccaagggggagaaaggcataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttggcctgtcatataagatgataggtgcagccccaagtaccaagggggagaaaggcataa 559

                                                                       
Query: 241 t--ttatccttttagaggttgaatttctgtattcactattcaagggtcttgttgtataga 298
           |  || | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taatt-t-catttagaggttgaatttctgtattcactattcaagggtcttgttgtataga 501

                                                                       
Query: 299 aatttctactgtaagttcaaagaccatgcctacctgtttaaaaaataataaatgctttag 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aatttctactgtaagttcaaagaccatgcctacctgtttaaaaaataataaatgctttag 441

                                                                       
Query: 359 gattccttatactaacttcatgaaaattatgcataagtgtaagtgggacttaaatattcg 418
           ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 gattccttatactaactccatgaaaattatgcataagtgtaagtgggacttaaatatttg 381

                                                
Query: 419 tttaataaactaatcaatgaatccaatgatttacttc 455
           |||||||||||||||||||||||||||||||||||||
Sbjct: 380 tttaataaactaatcaatgaatccaatgatttacttc 344


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space:   379904
Effective search space used:   379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)