XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTAGAA
GGGAATCCATGAAAAGGGATAACATTTCAAATGTAAATAAAGAAAATATC
CAATAAGAGTAAAGGAAAAAATAATAAGCCTCTTTCCTACAAAAACTCTT
CAAAGCACATGGTAGACATTCAATAAATGTCAGTTCTTTTCAAAAAAAAA
AGGAAAAAAAAGGAAAATAAAAATAAATAAATGCTGGGCTGGATAGACTT
CCATAACTAAGCCTTGCCAGACAATGTGATAATTATGTCAGTCATAATTG
CAATGGCTATATTCTGTTTCAAAATGTTCAGGAAATAGAAATGACTTTTT
CCATTTGATATTATTTATTGATCTATCATCAGTATTTTAGTTCACCAATA
AAAATCACAAGAGGAAATTGCTTTTGATGATATGCCCATATAATTACCAT
AGACTCACATAATCACAGAGACTACAAATGAGATCTCAACATAGAAAGCT
ATGACTTTATTCCTATTGAAGTAGAATAATAGCTACTTTTTACTTAAAAA
TCAATATTTCTATAAAGATTCATGACAACTAGAACAGAGTCAAGTTGTAC
TATCCTTAGGAAACACTAGATAGCTGTTAACAAAAAGTCACCAAGCATAT
TCTTGCTATCAAAAAAAAACACTGAATATCTTTCTGAGAACTTATAATAC
AATTCTGACTTTAAAATATTAAACTCAAGTTCATAGAGN

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAACTAAACCCAGTGAATTTAATTCATCTAATTGAG
CAGAAGCATCTCCAATGCTAAGATCTGGCACAAGGAAAAGGGAAAGAACA
AAACCCTTCAAATGTGCTGGTGCCCCTCTCACCAATTTGCGTCTTATAGA
ACTGGTGAAGGGCATATCTTCTGGACCTTCCCATTGTGGACAATTGGGCT
TTACACAATATATCCACTCTAGCATTGCAAGAAAGAGAGTAGGAGGAGAG
AGGAGAGGAGAGAGGAGAGTAAAGGGAGTAAGAATAAGAGAGGAAGGTGG
GGTCAAGTTGCCCTCTTACGGTCTATACTGTTCCTAGGTAACTTGGAGGA
GTCTAGCCTGAAGGTCAGAAGCTTGGGACATTGCCTACTGACTACTAACC
ATGCTTCTCTTGTGGGGGCTGAGGGGCGGTAACTTTGACAGGAGCCAGAT
TACCAGGAGACATGAAAGAACTCCTTTTGTCCCATGTAGGTGAATTATCA
CCACTAGGTCCTGGGGTTCAACATCTCAGTTTGACTGGAGACCAGATTGT
CTGTGTATAGCCCAATGCCCCACAGTCTATGTTTGGTGTCTGCAGATCAG
ATGGATTCCTAGGTGGAGCAGTTTCTTAGTGGCCTTTCTATCAGACTCTG
CTCCACTCTTTGCCCCTTCGTTTCTTGTAGACAAGAGGAAT

Query= MSMg01no491_p17.b1 MSMg01no491_p17.b1 CHROMAT_FILE:
MSMg01no491_p17.b1 PHD_FILE: MSMg01no491_p17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:04 2005
         (704 letters)



>mm_chr1_50608994_50610097
          Length = 1104

 Score = 1321 bits (683), Expect = 0.0
 Identities = 698/705 (99%), Gaps = 5/705 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctagaagggaatccatgaaaagggataacatttcaaatgtaaataaagaaaata 63
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 199 ggaattctagaagggaaaccatgaaaagggataacatttcaaatgtaaataaagaaaata 258

                                                                       
Query: 64  tccaataagagtaaaggaaaaaataataagcctctttcctacaaaaactcttcaaagcac 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tccaataagagtaaaggaaaaaataataagcctctttcctacaaaaactcttcaaagcac 318

                                                                       
Query: 124 atggtagacattcaataaatgtcagttcttttcaaaaaaaaaa---ggaaaaaaaa--gg 178
           |||||||||||||||||||||||||||||||||||||||||||   ||||||||||  ||
Sbjct: 319 atggtagacattcaataaatgtcagttcttttcaaaaaaaaaaaaaggaaaaaaaaaagg 378

                                                                       
Query: 179 aaaataaaaataaataaatgctgggctggatagacttccataactaagccttgccagaca 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aaaataaaaataaataaatgctgggctggatagacttccataactaagccttgccagaca 438

                                                                       
Query: 239 atgtgataattatgtcagtcataattgcaatggctatattctgtttcaaaatgttcagga 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atgtgataattatgtcagtcataattgcaatggctatattctgtttcaaaatgttcagga 498

                                                                       
Query: 299 aatagaaatgactttttccatttgatattatttattgatctatcatcagtattttagttc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 aatagaaatgactttttccatttgatattatttattgatctatcatcagtattttagttc 558

                                                                       
Query: 359 accaataaaaatcacaagaggaaattgcttttgatgatatgcccatataattaccataga 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 accaataaaaatcacaagaggaaattgcttttgatgatatgcccatataattaccataga 618

                                                                       
Query: 419 ctcacataatcacagagactacaaatgagatctcaacatagaaagctatgactttattcc 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ctcacataatcacagagactacaaatgagatctcaacatagaaagctatgactttattcc 678

                                                                       
Query: 479 tattgaagtagaataatagctactttttacttaaaaatcaatatttctataaagattcat 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tattgaagtagaataatagctactttttacttaaaaatcaatatttctataaagattcat 738

                                                                       
Query: 539 gacaactagaacagagtcaagttgtactatccttaggaaacactagatagctgttaacaa 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 gacaactagaacagagtcaagttgtactatccttaggaaacactagatagctgttaacaa 798

                                                                       
Query: 599 aaagtcaccaagcatattcttgctatcaaaaaaaaacactgaatatctttctgagaactt 658
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 aaagtcaacaagcatattcttgctatcaaaaaaaaacactgaatatctttctgagaactt 858

                                                        
Query: 659 ataatacaattctgactttaaaatattaaactcaagttcatagag 703
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 859 ataatacaattctgactttaaaatattaaactcaagttcatagag 903


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1104
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1094
Effective search space:   759236
Effective search space used:   759236
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)