Query= MSMg01no492_d20.b1 MSMg01no492_d20.b1 CHROMAT_FILE:
MSMg01no492_d20.b1 PHD_FILE: MSMg01no492_d20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:24 2005
(530 letters)
>mm_chr1_136150321_136151250
Length = 930
Score = 777 bits (402), Expect = 0.0
Identities = 475/534 (88%), Gaps = 56/534 (10%)
Strand = Plus / Minus
Query: 1 agggttatcagcatgcatcatgacacctggccaggctgttttctgggagagcacaacttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 agggttatcagcatgcatcatgacacctggccaggctgttttctgggagagcacaacttt 466
Query: 61 ctttcaccttattaagttccccagacttgaagccgatgcctagaaattcagacatatcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 ctttcaccttattaagttccccagacttgaagccgatgcctagaaattcagacatatcct 406
Query: 121 caagttgtctgcaacgcagccaggagcagcaaacatggttggcattttaaagtctttctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 caagttgtctgcaacgcagccaggagcagcaaacatggttggcattttaaagtctttctc 346
Query: 181 tctgaactttctggtttagtatttgtacgatgattaattaacaagacatgacttcgacag 240
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 345 tctgaactttctggtttagtatttgtacgatgattaattaacaagacataacttcgacag 286
Query: 241 gttttt----ataaacaaatagcacttgtgccacacccagaattgtgccattcataagga 296
|| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 gt----ccaaataaacaaatagcacttgtgccacacccagaattgtgccattcataagga 230
Query: 297 cactcaagaggctaatttcaaaatataaaaaaatgctaggtaagatatacctactggtgc 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 cactcaagaggctaatttcaaaatataaaaaaatgctaggtaagatatacctactggtgc 170
Query: 357 aatagtggtatcgctgtaaggggtaatcaactcctttcttccttccttccttccttcctt 416
|||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct: 169 aatagtggtatcgctgtaaggggtaatcaactcctttcttccttcctttctttctt---t 113
Query: 417 ccttccttccttccttccttccttccttccttccttccttccttcctttctttctttctt 476
| ||||||||||||||
Sbjct: 112 c---------------------------------------------tttctttctttctt 98
Query: 477 tctttctttctttctttctttctttcttcctttctaaagatttgtttatttatt 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 97 tctttctttctttctttctttctttcttcctttctaaagatttgtttatttatt 44
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 930
Length adjustment: 10
Effective length of query: 520
Effective length of database: 920
Effective search space: 478400
Effective search space used: 478400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_d20.g1 MSMg01no492_d20.g1 CHROMAT_FILE:
MSMg01no492_d20.g1 PHD_FILE: MSMg01no492_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:25 2005
(499 letters)
>mm_chr1_135994496_135995394
Length = 899
Score = 911 bits (471), Expect = 0.0
Identities = 492/499 (98%)
Strand = Plus / Plus
Query: 1 acacttaacccagtaactccttgtgggtttgaaccttgcgcagtacttctacctccgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acacttaacccagtaactccttgtgggtttgaaccttgcgcagtacttctacctccgctt 260
Query: 61 cctgaacgcggaggctgcaggctccaaacaccacaagctgctcccactgtccttccttcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cctgaacgcggaggctgcaggctccaaacaccacaagctgctcccactgtccttccttcc 320
Query: 121 ttgaggcagtcagaccatgctgcccagactggccttgaactctcaatcctcctgcctcag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttgaggcagtcagaccatgctgcccagactggccttgaactctcaatcctcctgcctcag 380
Query: 181 ctttcaagtgctgccacacaccaggttatatgaaccttttgagtacccaagaagcagctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttcaagtgctgccacacaccaggttatatgaaccttttgagtacccaagaagcagctt 440
Query: 241 ttttttttcagctcagagtgccatgctacagggctaggtcaggctttcctttctgacaga 300
|| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 ttgaatttcagctcagagtgccatgctatagggctaggtcaggctttcctttctgacaga 500
Query: 301 gaggctgtatactttccagccggaatgtaagggagcagatgcccgagactgctgtcgctt 360
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 501 gaggctgtatactttccagccggaatataagggagcagatgcccgagactgctgtcgctt 560
Query: 361 gaggtctaggtcctgctggccctttctgaaccctcctggctcctcctcccagccactgga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaggtctaggtcctgctggccctttctgaaccctcctggctcctcctcccagccactgga 620
Query: 421 gaactgccacattgagaggcagaacctgggaggcatcagagcccattcatttttaatagt 480
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 621 gaactgccacattgagaggcagaacctgggaggcgtcggagcccattcatttttaatagt 680
Query: 481 ccagctgccatggtctccc 499
|||||||||||||||||||
Sbjct: 681 ccagctgccatggtctccc 699
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 499
Length of database: 899
Length adjustment: 10
Effective length of query: 489
Effective length of database: 889
Effective search space: 434721
Effective search space used: 434721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
