NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTGCACTATACCCATCTAGTCCTGGTTTTTTTTTGGTTGGGAGAC
TATTAATGATTGTATCTATTTCTTTAGGGGTTATGGGACTGTTTAGATGG
TTTATCTGATCCTGTTTTAACTTAGATATTTGGTATCTGTCTAGAAAATT
ATCCATTTCATCCAGATTTTACAGATTTGTTGAGTATAGGATTTTGTAGT
CAGATCTGATATAGATATTTTAAATTTCCTTGGTTTCTGGTGTTATGTCT
CCATTTTCATTTCTGATTTTGTTCATTTGGATCCTGTCTCTGTGCCCTCT
GGTTAGTTTGGTTAAGGGTATATATATATATATATATATATATATATATA
TATATATATATATATATATATATATATATATATATATATATATATATATA
TATATACTCTATCTATATATATATATATATATATATATATATATATATAT
ATATAGAGATATATATATATATATATATATATATATATATATATATCACA
CACTCACTCTCTCTATCTATAAAGAGAGAGATATATATATATATAGAGAG
AGAGAGAGAGAGAAAGAGAGAGAGAGAGAAAACAAACAAAAAAATAAGTT
CTCTCCCTCACACATACACACATACATACATACACACACACACACACACA
CACACACACACAGTGTGTCGCTGT

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTTAATTATTAAGACTGTAGTCCTGA
CCAAGCTGCTGTCATAGAATGTGACAGCATCTGTGGAAAGCTCAGAAATG
ACCAACAATTGTCAGACAGATGAAATGATAGGGAAGGTGCTAAGTGGCTA
GATACACAGCCTGGTTAAAGAATTAATCAAAGCCTTTGCTGGAGAAGAGA
AGGAGGGTTGGGGAGGGACAGAGGAAAGAGGGGGAAGAAGGATTCCTATG
ACCACAGCTGCACAGATCCTAGCGCCATGTTCATCTCCTGAAGCTTCCTT
CTTAGTGACCAGCAAATCAGAAATTGCCCAGACATCCAGGCCGCCTTGGC
AGATACAGAGTGGGAGAGGACTCCATCTCCAGACACATTGTCTTTCTGAA
ACTGCAACATTCATAGAGATTAAGTTCTTACTTACCCTGTTCAGGAGCTC
TTCAGGAATTCTGAGTTTAGAAGATTGCATTGGCTTTCTCTGAAAAAAAA
ATAAATATAACTATCTGTAAAATATTTTAACTGTTGGAAAATAGATTCAA
TATTTTAACCAATTCAATTAGAATAGTTTTTGACATGTTTTGAGTGTGTG
AAAATATTCTAAATCAAAGCTGGATAAGGTATTAGCCCCTGACAACACAT
TGCCCTTCAAACAACAACAACAAC

Query= MSMg01no492_d24.g1 MSMg01no492_d24.g1 CHROMAT_FILE:
MSMg01no492_d24.g1 PHD_FILE: MSMg01no492_d24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:25 2005
         (604 letters)



>mm_chr1_32995609_32996609
          Length = 1001

 Score = 1114 bits (576), Expect = 0.0
 Identities = 596/604 (98%), Gaps = 3/604 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttaattattaagactgtagtcctgaccaagctgctgtcatagaatgtgacagcatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcttaattattaagactgtagtcctgaccaagctgctgtcatagaatgtgacagcatctg 260

                                                                       
Query: 61  tggaaagctcagaaatgaccaacaattgtcagacagatgaaatgatagggaaggtgctaa 120
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 261 tggaaagctcagaaatgaccaacaattgtcagacagatgaaatggtagggaaggtgctaa 320

                                                                       
Query: 121 gtggctagatacacagcctggttaaagaattaatcaaagcctttgctggagaagagaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtggctagatacacagcctggttaaagaattaatcaaagcctttgctggagaagagaagg 380

                                                                       
Query: 181 agggttggggagggacagaggaaagagggggaagaaggattcctatgaccacagctgcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggttggggagggacagaggaaagagggggaagaaggattcctatgaccacagctgcac 440

                                                                       
Query: 241 agatcctagcgccatgttcatctcctgaagcttccttcttagtgaccagcaaatcagaaa 300
           ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaccctagtgccatgttcatctcctgaagcttccttcttagtgaccagcaaatcagaaa 500

                                                                       
Query: 301 ttgcccagacatccaggccgccttggcagatacagagtgggagaggactccatctccaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcccagacatccaggccgccttggcagatacagagtgggagaggactccatctccaga 560

                                                                       
Query: 361 cacattgtctttctgaaactgcaacattcatagagattaagttcttacttaccctgttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 cacattgtctttctgaaactgcaacattcatagagattaagttcttactcaccctgttca 620

                                                                       
Query: 421 ggagctcttcaggaattctgagtttagaagattgcattggctttctctgaaaaaaaaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 621 ggagctcttcaggaattctgagtttagaagattgcattggctttctctgaaaaaaaaa-- 678

                                                                       
Query: 481 aatataactatctgtaaaatattttaactgttggaaaatagattcaatattttaaccaat 540
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 -atataactatctgtaaaatattttaactgttggaaaatagattcaatattttaaccaat 737

                                                                       
Query: 541 tcaattagaatagtttttgacatgttttgagtgtgtgaaaatattctaaatcaaagctgg 600
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 tcaattagaatagttttcgacatgttttgagtgtgtgaaaatattctaaatcaaagctgg 797

               
Query: 601 ataa 604
           ||||
Sbjct: 798 ataa 801


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1001
Length adjustment: 10
Effective length of query: 594
Effective length of database: 991
Effective search space:   588654
Effective search space used:   588654
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)