BAC Information

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BAC

Clone NameMSMg01-492H15
Chromosome1 (Build37)
Map Location 176,466,228 - 176,466,860
singlet/doubletsinglet
Overlap geneFmn2
Upstream geneLOC623121, AI447904, E430029J22Rik, LOC665972, AI607873, Ifi204, EG666028, LOC100040462, Mnda, Ifi203, Ifi202b, Ifi205, Olfr433, Olfr432, GA_x5J8B7W3B3M-30314-31216, Olfr430, Olfr429, Olfr426, Olfr1528-ps1, Olfr244, Olfr424, Olfr423-ps1, Olfr421, Olfr422-ps1, Olfr420, Spna1, Olfr419, 1810030J14Rik, Olfr417, GA_x5J8B7W3B3M-312879-313274, GA_x5J8B7W3B3M-318013-318414, Olfr415, Olfr414, Olfr220
Downstream geneGrem2, Rgs7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492H15.T7 (MSMg01no492_h15.b1)MSMg01-492H15.TJ (MSMg01no492_h15.g1)
ACCAG570223AG570224
length717733
length of high quality
(start - end)		636 (43 - 678)591 (73 - 663)
definitionCHROMAT_FILE: MSMg01no492_h15.b1 PHD_FILE: MSMg01no492_h15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:43 2005CHROMAT_FILE: MSMg01no492_h15.g1 PHD_FILE: MSMg01no492_h15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:16:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATT
CTCCTGTCTTCTGTGTGTCTTGATGTCTGTGGATCCTCCGTTTCTGCTGT
ATCCTTCCTTAATGATTCTTCTCTGGAGAGAAAACAAAATATTTAAATTA
AATGTTCAATGGGAAGCTGCTTCTTGTGTTAAAAATTATTTGGACTTTTA
CTTATTATTTTACGTATATGGGTATTTTGCCTGTATGGATGTTTGTCACA
TGTATGTGGTGCCTGCAGAGGCTGGAAGAGGATCCGCTCTAACTCGAGCC
ATAGATGAATGTGGTCCACCATGTAGATTTTATAGAACCAGGTCCTCTGT
AAAAGGAGCAAGTTCTCTTAACGGCTGAGCCATCTCTCCAGGCCCCACAC
ATAGCTGTTTCTATGGAGCAACTGAAAACATTTAGAACTTTTTCTTCTTC
AGGGTGACTTTTCTCTCCTGGCCAGCTTTCTTGCCTGTTTTATGGCCTGA
TACCTTTGTCTGTGCCTCACTCTCTTCCTTTCCCCAGTGCTGGGTCTGAG
AAAGTGAATGTCAGTCAGGCTCTGACATTTCTAGGCCCAAAATGGTGGTG
GCAGTTTGAGTTACTGCTTCCTCAAAGAATACTCTGAAGGCAGGGGGAAA
CAAAAACAAAAACAAAAAAAAAACAGAAAACAAGCAAAAAGAGAAATGCT
TAATTAAATCCTAAAGG

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGA
AGCACTTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATC
AAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAA
AAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACAC
TCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCA
GTCTGGCGGTTCCTCTGATAACTGGACATAGTACTACCGGAGGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGG
ACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGG
ATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAA
ACACATGAAACTCAAGAAGAATGAAGACTGAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_h15.b1 MSMg01no492_h15.b1 CHROMAT_FILE:
MSMg01no492_h15.b1 PHD_FILE: MSMg01no492_h15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:43 2005
         (636 letters)



>mm_chr1_176466025_176467060
          Length = 1036

 Score = 1203 bits (622), Expect = 0.0
 Identities = 631/634 (99%), Gaps = 2/634 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   gaattctcctgtc-ttctgtgtgtcttgatgtctgtggatcctccgtttctgctgtatcc 62
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctcctgtcatt-tgtgtgtcttgatgtctgtggatcctccgtttctgctgtatcc 262

                                                                       
Query: 63  ttccttaatgattcttctctggagagaaaacaaaatatttaaattaaatgttcaatggga 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ttccttaatgattcttctctggagagaaaacaaaatatttaaattaaatgttcaatggga 322

                                                                       
Query: 123 agctgcttcttgtgttaaaaattatttggacttttacttattattttacgtatatgggta 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 agctgcttcttgtgttaaaaattatttggacttttacttattattttacgtatatgggta 382

                                                                       
Query: 183 ttttgcctgtatggatgtttgtcacatgtatgtggtgcctgcagaggctggaagaggatc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttttgcctgtatggatgtttgtcacatgtatgtggtgcctgcagaggctggaagaggatc 442

                                                                       
Query: 243 cgctctaactcgagccatagatgaatgtggtccaccatgtagattttatagaaccaggtc 302
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 443 cgctctaactcgagccatagatgaatgtgggccaccatgtagattttatagaaccaggtc 502

                                                                       
Query: 303 ctctgtaaaaggagcaagttctcttaacggctgagccatctctccaggccccacacatag 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ctctgtaaaaggagcaagttctcttaacggctgagccatctctccaggccccacacatag 562

                                                                       
Query: 363 ctgtttctatggagcaactgaaaacatttagaactttttcttcttcagggtgacttttct 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgtttctatggagcaactgaaaacatttagaactttttcttcttcagggtgacttttct 622

                                                                       
Query: 423 ctcctggccagctttcttgcctgttttatggcctgatacctttgtctgtgcctcactctc 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ctcctggccagctttcttgcctgttttatggcctgatacctttgtctgtgcctcactctc 682

                                                                       
Query: 483 ttcctttccccagtgctgggtctgagaaagtgaatgtcagtcaggctctgacatttctag 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttcctttccccagtgctgggtctgagaaagtgaatgtcagtcaggctctgacatttctag 742

                                                                       
Query: 543 gcccaaaatggtggtggcagtttgagttactgcttcctcaaagaatactctgaaggcagg 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 gcccaaaatggtggtggcagtttgagttactgcttcctcaaagaatactctgaaggcagg 802

                                             
Query: 603 gggaaacaaaaacaaaaacaaaaaaaaaacagaa 636
           ||||||||||||||||||||||||||||||||||
Sbjct: 803 gggaaacaaaaacaaaaacaaaaaaaaaacagaa 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 636
Length of database: 1036
Length adjustment: 10
Effective length of query: 626
Effective length of database: 1026
Effective search space:   642276
Effective search space used:   642276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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