Query= MSMg01no492_l03.b1 MSMg01no492_l03.b1 CHROMAT_FILE:
MSMg01no492_l03.b1 PHD_FILE: MSMg01no492_l03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:59 2005
(639 letters)
>mm_chr1_101398055_101399093
Length = 1039
Score = 1160 bits (600), Expect = 0.0
Identities = 627/636 (98%)
Strand = Plus / Plus
Query: 1 caaatgtgtggaactagaaaatatcatcctgagtgaggtagctcaatcacaaatgaacac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaatgtgtggaactagaaaatatcatcctgagtgaggtagctcaatcacaaatgaacac 260
Query: 61 acatggtttacactcactgataagtggatattagcccagaagctcagaatacccaagata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acatggtttacactcactgataagtggatattagcccagaagctcagaatacccaagata 320
Query: 121 ctattcacagaccaaatgaagcttaaggagaaggaacaccaaagaaagttcttataatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctattcacagaccaaatgaagcttaaggagaaggaacaccaaagaaagttcttataatgg 380
Query: 181 aagaccttagataaacattttcattcatacgttaaatcatcacatcatcatcagttatca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagaccttagataaacattttcattcatacgttaaatcatcacatcatcatcagttatca 440
Query: 241 ttttatgtattattttaaagattcctacagagttctgctaatccacactctaattgttac 300
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttatgtactattttaaagattcctacagagttctgctaatccacactctaattgttac 500
Query: 301 ttcttccattactctcatgaaagatggtttagaaaacaacttaaagccaggccaatttgg 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 ttcttccattactctcatgaaagacggtttagaaaacaacttaaagccaggccaatttgg 560
Query: 361 gcttatagttcatgtgcatagattattgcaagaaaagcatggaggcaggagtagcctggg 420
||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 561 gcttacagttcatgtgcatagattattgcaagaaaagcatggaggcaggaatagcctggt 620
Query: 421 catggtgtttctataatcacgaagtatgattagcaagtagtggagcaggctatacagcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catggtgtttctataatcacgaagtatgattagcaagtagtggagcaggctatacagcct 680
Query: 481 taactctgatcgtaggaatgcaccttccccaaaccctcattgctcctcctcaatgcttta 540
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taactctgatcttagtaatgcaccttccccaaaccctcattgctcctcctcaatgcttta 740
Query: 541 ccctttaaagggtccacagcctttcaaatagtaccacctccgggggactaaatattaaaa 600
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 741 ccctttaaagggtccacagcctttcaaatagtaccacctcctggggactaaatattaaaa 800
Query: 601 catatgaatccgtgtgtgtgtgtgtgtgtgtgtgtg 636
||||||||||| ||||||||||||||||||||||||
Sbjct: 801 catatgaatccatgtgtgtgtgtgtgtgtgtgtgtg 836
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no492_l03.g1 MSMg01no492_l03.g1 CHROMAT_FILE:
MSMg01no492_l03.g1 PHD_FILE: MSMg01no492_l03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:16:59 2005
(603 letters)
>mm_chr1_101568315_101569317
Length = 1003
Score = 1040 bits (538), Expect = 0.0
Identities = 586/602 (97%), Gaps = 2/602 (0%)
Strand = Plus / Minus
Query: 1 ttaactttgagtttattcttatctactaaagctaatgaatagagagaggtgaatagttaa 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ttaactttgattttattcttatctactaaagctaatgaatagagagaggtgaatagttaa 742
Query: 61 gtaatgtatcccattgtaattctatttcacaatgccctgtttgtgtgaaataagcaatgg 120
|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 741 gtaatggatcccattgtaattctatttcacaatgccctgtttgtgtgaaagaagcaatgg 682
Query: 121 cttccactccagtaccactctcatttgagcagaaaagtaaatgaccatataggtagaaat 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 681 cttccactccagtaccactctcatttgaggagaaaagtaaatgaccatataggtagaaat 622
Query: 181 tgccattgatatgttaatgtcaggtgtattagtaattaactgactgtttttcccaaataa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgccattgatatgttaatgtcaggtgtattagtaattaactgactgtttttcccaaataa 562
Query: 241 atttattcattattttgctttgtttaaattcatcttagtcgtggaaatgttgctccttgc 300
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attcacccattattttgctttgtttaaattcatcttagtcgtggaaatgttgctccttgc 502
Query: 301 taataacacactaacaagcccgtgtttgacagaacattgggggaaaa-tccttttcttgt 359
|||||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||
Sbjct: 501 taataacacactaacaagtccatgtttgacagaacattgggggaaaaatccttttcttgt 442
Query: 360 gatctatattgtcttccacactaagatgatacaagactttccttgcttatattgcatatt 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gatctatattgtcttccacactaagatgatacaagactttccttgcttatattgcatatt 382
Query: 420 ctgtagtttttgtccctataaaccagttctttagtttttgaaatttgtgcatattttcag 479
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtagtttttgtccctataaaccaattctttagtttttgaaatttgtgcatattttcag 322
Query: 480 atctttaatgagagaagatgatgatagtcaagagatatacccagtgggggtgctagatct 539
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 321 atctttaatgagagaagatgatgatagtcaagagttatacccagtgggg-tgctagatct 263
Query: 540 tgagatatcagttctttattctttcaatcaagaagaaaataatgagtatgaagttgagag 599
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 262 tgagatatcagttccctattctttcagtcaagaagaaaataatgagtatgaagttgagag 203
Query: 600 gc 601
||
Sbjct: 202 gc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
