BAC Information

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BAC

Clone NameMSMg01-492M06
Chromosome1 (Build37)
Map Location 189,948,837 - 190,089,266
singlet/doubletdoublet
Overlap geneEsrrg, Ush2a
Upstream geneSpata17, Gpatch2, 9330162B11Rik
Downstream geneKctd3, Kcnk2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492M06.T7 (MSMg01no492_m06.b1)MSMg01-492M06.TJ (MSMg01no492_m06.g1)
ACCAG570443AG570444
length716719
length of high quality
(start - end)
180 (118 - 297)143 (77 - 219)
definitionCHROMAT_FILE: MSMg01no492_m06.b1 PHD_FILE: MSMg01no492_m06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:04 2005CHROMAT_FILE: MSMg01no492_m06.g1 PHD_FILE: MSMg01no492_m06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(189,948,837 - 189,949,016)(190,089,124 - 190,089,266)
sequence
AATXXXXXXXXXXXXXXXXXXXXXXXXNANATTTCGAAGCGGGGCGGAAT
TCACCACCATTGCTCAAAGAGTGTATNAANTTCTCTTCTGTTCTTTTTGC
TTCTAGACTCCACTCCCACCCAGATAACTAACAATAAAGCACTATCCATT
TTCATTAAATAGCAGATCAACAATGAAGAAGACAGATCACAGTCTTGCAC
ATGCCACTGGAGAGGCGGGTAGCTGTTACTCATTTGCACTGCTCTTTATG
TACAATGGGCACTGCTTTCCCCCACTGACTGGCTTCTTTCTGGCTGTGCG
GCTGAGCATTTTCTGTTTACTGGCAAGGAGGGCTGCGTGTGTCTCTGATG
TTGGATGGGTTCCCTGCAACCCGCACTGTCTCAGAGGTTGGTACCTGCTT
CCTTCTCCTCGCTGGTGTGCTGAGGAGCATCCTCAGCCTGTCCTAGAGAT
GCTACATGACAATGTGGGAAGTTGCTTATGTGATTCATTAACTGATTAAC
TGATTTCTCTTCTATCAACCCCTCTGGCAAGATGGCAGCAATAATCTGAA
ACTGTTGTGATCCCTGGGCCATTATTATTCTTTGAAACATAGGTTGAGGG
TGTCGGGTAAAAAAGCTTTAAATCCACTGCATATTTATTTATTAGTCTGA
CCTACCCGATCACAGATAAGGCTAAGATTCTGGAGTATGCTAGGCCATAA
GGACATTTTTTGCCAC
ATGCTGTGNGTAGGTCTGGCGGCCTCCTGGCCATCAGAAAAGGGGTNGAA
CTATANAAGGATTCTGNAAATTCAATCATTACATAGGAATGTATTTACCA
AATGCAGACTTATTTCCCCAAGCTTGCTGAAAATGCTTTTCTTAATATGT
TATTGATTATCTCCCTTGCTATTTTGTTTGCTTGTAAACACTCTAGCTTT
GGTAGATAATAAATGTGAGACGGAGGCAGGTGGCAAAATATTTAGGAACT
GGATGTATTCTGCTCCTGAATACACAGTAATTGGATAATCCCTGTTTTGG
TTGTTTTACTTATCTGGAGCAAACACCCCCAAAGCTCCCCCAATTCCCAT
AGGTGCTTTAGCATCAAGAATGAAATGACGTTGATACAAGCAACAGATCC
CCTAAACTATAAGCCTCATGCCAGCACCTCTAGGAATGCCCAGTATTCTA
TCATGATGAAAGGTAACTCACATTATGGGTGTTCGATCCCGAGACTTCTC
TGCGAACTTGCAAAGGTGTTTTATGAGATCACATGTTGGTGGCTTGACAA
GCACCTCCATTTCCTCGACATTTCGAGCTTTCCGACTTAGAAGTCCCTTT
CTTTGTTGGTGAAGGTATCCAATTTGATTCATGTGCATTACACATGCTAT
TTTCTTCTTTCCCAAACTTCCATCCAACGTAAATTGGACCATTGACCCTT
CCCCTTGCCATACGAATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_m06.b1 MSMg01no492_m06.b1 CHROMAT_FILE:
MSMg01no492_m06.b1 PHD_FILE: MSMg01no492_m06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:04 2005
         (180 letters)



>mm_chr1_189948637_189949216
          Length = 580

 Score =  286 bits (148), Expect = 4e-82
 Identities = 172/180 (95%)
 Strand = Plus / Plus

                                                                       
Query: 1   acccagataactaacaataaagcactatccattttcattaaatagcagatcaacaatgaa 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 acccagataactaacaataaagcactatccattttcattaaaaagcagatcaacaatgaa 260

                                                                       
Query: 61  gaagacagatcacagtcttgcacatgccactggagaggcgggtagctgttactcatttgc 120
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 261 gaagacagatcacagtctcgcacatgccactggagaggcgggtggctgttactcatttgc 320

                                                                       
Query: 121 actgctctttatgtacaatgggcactgctttcccccactgactggcttctttctggctgt 180
           |||||||  |||||||||||  ||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 actgctcagtatgtacaatgaccactgctttcccccactgactggcttctttctgtctgt 380


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space:    98384
Effective search space used:    98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no492_m06.g1 MSMg01no492_m06.g1 CHROMAT_FILE:
MSMg01no492_m06.g1 PHD_FILE: MSMg01no492_m06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:05 2005
         (143 letters)



>mm_chr1_190088924_190089466
          Length = 543

 Score =  277 bits (143), Expect = 3e-79
 Identities = 143/143 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattacataggaatgtatttaccaaatgcagacttatttccccaagcttgctgaaaatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 cattacataggaatgtatttaccaaatgcagacttatttccccaagcttgctgaaaatgc 284

                                                                       
Query: 61  ttttcttaatatgttattgattatctcccttgctattttgtttgcttgtaaacactctag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 ttttcttaatatgttattgattatctcccttgctattttgtttgcttgtaaacactctag 224

                                  
Query: 121 ctttggtagataataaatgtgag 143
           |||||||||||||||||||||||
Sbjct: 223 ctttggtagataataaatgtgag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)