BAC Information

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BAC

Clone NameMSMg01-492N14
Chromosome1 (Build37)
Map Location 132,918,013 - 132,918,303
singlet/doubletsinglet
Overlap geneIl10
Upstream geneThsd7b, Daf2, Cd55, Zp3r, C4bp, C4bp-ps1, Pfkfb2, Yod1, AA986860, Fcamr, Pigr, Faim3, Il24, Il20, Il19
Downstream geneMapkapk2, Dyrk3, Lgtn, Rassf5, Ikbke, Srgap2, LOC100042826, LOC100042821, 2700049P18Rik, Avpr1b, LOC667238, Ctse, 5430435G22Rik, Slc26a9, 4732466D17Rik, Slc41a1, Rab7l1, Nucks1, Slc45a3, Elk4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-492N14.T7 (MSMg01no492_n14.b1)MSMg01-492N14.TJ (MSMg01no492_n14.g1)
ACCAG570507AG570508
length707729
length of high quality
(start - end)
144 (312 - 455)293 (72 - 364)
definitionCHROMAT_FILE: MSMg01no492_n14.b1 PHD_FILE: MSMg01no492_n14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:11 2005CHROMAT_FILE: MSMg01no492_n14.g1 PHD_FILE: MSMg01no492_n14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAATTTGCGGCGCTAAACGACTACTAAGTGCGAACACGCGGGAATCCCCT
GCTTCCTAACAAAGGTGGNANGACNATTTCCCTTACATTCTANACGAAAC
CTCTTCATCTGTCTCCAGACTCATGAAAGGGGCAGAAGACGTGATATTTA
GATGTGCACCTGTCTTAGTCAGGGTTTCTATTCCTGCACAAACATCACGA
TCAAGAAGCAGTTGGGGAGGAAAGGGTTTATTCTTCTTACACTTCCATAC
TGCTGTTCATCACCAAGGAAATCAGGACTGGAACTCAAGCAGGTCAGATT
GTTGTTTTGACGCAGAGGCCATGGAGGGATGTTCTTTACTGGCTTGCTTC
CCCTGTCTTGCTCAGCCTGCTCTCTTATAGAACCCAAGACTCCCAGCCCA
GAGATGGTCTCACCCACAAGGGGCCTTTCTCCCTTGATCGCTAATTGAGA
AAATGCCTTACAGTTGGATCTCATGGAGGCATTTCCTCAACTGAAGCTCC
TTTCTCTGTGATAAATCCTGCTGTGTGAAGCTGACACACAAAACCAGCCA
GTACAAGGGGTCAAAGGCATGCACCCGGCTTTACTCAGGTTATTTCTAAA
ACAAGATCCGGATGCCTGTAACCTTTTCAGAACTTCGAAGCCAGTGCTCC
TGGAGAAATCCTTCCTCCTCCATCTCCAATACGTTGGCAATTCTCGTTGC
TGCTTCC
TTGCTGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCTGGGTGAGAAGCTGAAGACCCTCAGGA
TGCGGCTGAGGTGCTGTGTGAGTAGCAGATGCGTTCTTCCCCACCCCCAA
TCCCCCCAGAGCCACCCAACAAATACTGTCTCCTACAGCCCAGTCAGGCC
ACATGCATCCAGAGACACACACAGACTAGACAGGAGACTAGGTAAATCTA
GAGAGACGCCTGTCCGGTGTCGGGTCTCTTGCTCATCTGTCTCTGAGCGA
GTGTGGTATTGTTTTTGAGGCACTCACACGTGAAGATTTGCGCAGAGCCT
TCCTGTTATTTGCGAGTCATTGTGGGTTATTAGCTACTCCCCTCTCTCTC
CATGGTAAGGCTGGCGCTTCAGTCATGGTTCCCTCACCTCTGGTCTGTCA
GCTGAGGCTCCCAAGCACAGGAAAACATTCATCTCTTTATCTCATCTTTT
GGGAAGCAAATTCAGTGGCACTGAGCTGGCCTGACATGTATCTGGTGTCT
CACAATGGCCAGAAGACTGCTATCCCTAAGCTCGTATCTACGAATAACAC
ATTCCGGGCTACCCATTGTCCCCGAATCGATTCCTTTGCCTTGTCCTTTG
CTTCTCCTACCTCTTCTCCCTGTATACTGGGTACATCCGTTTGCAGTCCT
ACCTGTTGACACCGCATTCCGCTCTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no492_n14.g1 MSMg01no492_n14.g1 CHROMAT_FILE:
MSMg01no492_n14.g1 PHD_FILE: MSMg01no492_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:11 2005
         (293 letters)



>mm_chr1_132917813_132918505
          Length = 693

 Score =  501 bits (259), Expect = e-146
 Identities = 283/291 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctgggtgagaagctgaagaccctcaggatgcggctgaggtgctgtgtgagtagcagatg 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 cctgggtgagaagctgaagaccctcaggatgcggctgaggcgctgtgtgagtagcagatg 260

                                                                       
Query: 61  cgttcttccccacccccaatccccccagagccacccaacaaatactgtctcctacagccc 120
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 261 cgttcttccccacccccaatccccttagagccacccaacaaatactgtctcctacagccc 320

                                                                       
Query: 121 agtcaggccacatgcatccagagacacacacagactagacaggagactaggtaaatctag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcaggccacatgcatccagagacacacacagactagacaggagactaggtaaatctag 380

                                                                       
Query: 181 agagacgcctgtccggtgtcgggtctcttgctcatctgtctctgagcgagtgtggtattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 381 agagacgcctgtccggtgtcgggtctcttgctcatctgtctctgagcgagtgtgggagtg 440

                                                              
Query: 241 tttttgaggcactcacacgtgaagatttgcgcagagccttcctgttatttg 291
             ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 actttgaggcactcacacgtgaagatttgcgcatagccttcctgttatttg 491


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)