BAC Information

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BAC

Clone NameMSMg01-493C02
Chromosome1 (Build37)
Map Location 59,400,990 - 59,401,673
singlet/doubletsinglet
Overlap geneAls2cr7
Upstream geneAox3l1, EG628262, Bzw1, Clk1, Ppil3, Nif3l1, Orc2l, BC049806, Ndufb3, EG667397, Als2cr12, Cflar, LOC100042431, Casp8, EG667419, Trak2, Als2cr2, 4930408G06Rik, EG667447, Als2cr11, Als2cr4, Mpp4, Als2
Downstream geneFzd7, Gm973, Sumo1, LOC100042476, Nol5, B430105G09Rik, LOC100043007, Bmpr2, Als2cr13, LOC100042496, Ica1l, Wdr12, Carf, Nbeal1, Cyp20a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-493C02.T7 (MSMg01no493_c02.b1)MSMg01-493C02.TJ (MSMg01no493_c02.g1)
ACCAG570722AG570723
length742807
length of high quality
(start - end)
688 (47 - 734)183 (76 - 258)
definitionCHROMAT_FILE: MSMg01no493_c02.b1 PHD_FILE: MSMg01no493_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:33 2005CHROMAT_FILE: MSMg01no493_c02.g1 PHD_FILE: MSMg01no493_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:17:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACCACTAATATGAAAAATCATCCTGACTTAGCAAGAAATGTCGC
TTCAACACTGAATATCTTGTACCCCAGGAAACCTTGCAGCCTTTGGGAAA
AGTGGGTCTGTTGGTCAACTTTCGCCCTGATGTGTCTTTCCAGCTGACAC
AGAGGCCTGCCCGGCTAAGAAAAACGATGTCACCAGAGCTTTTTATTCCA
CCAGTATTGGTGGAAATCTTCAAGCTGTTATTCAGGGGGCCACCACAGCT
CCATGGGTGGGAGAAGTGGTCATAGCATCCTCATCTCTTCTCCAGCTTAG
GAAGTAGGGTTCTAAAGGAGGCTGCCCTCGGAGTGGGGAGAAAGTCCTAG
ACCCCAGACAAAGGCAGACCCTGTTCCCTTCTGCAAGCAGCAATCGATCA
ATCAATTGATCAATTGCCTGTGGTTCTGGGCCTGCTCACCTTCAGAGATG
TAGGTAACCTCACCTTTTCTTTTCACCAACATTTGTTAACCCCGACTAGG
TGGTGTCTCTTCCTGTAGGAAGCCGAAAGGTCACACATTTCTGGCTTTAG
CTTCACTCCCGAAACTGCAAACAGAGACTCCTCTGTAGGGAGGAAAAGAG
AAGAGCATCTATATAGTATTTCCTGAACTCTTCAATAGTACACATGTTTT
GTCTGCCTGTTGTAACATCTGATACCCAAAGAGATGTTGAAA
ATGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCCTTCTGACTGTAAAACCACTTTA
AGATGTTCCCTGCATGTATATGATCTCAGGGCTGATTGTACATACAGGTA
ACATTAAATGGACTAAGCATGTTGTATTTATGTATTTAGGGATAGATCTT
GAATTTGAGAGAGGGAGAGGGAGAAAGAGAGGAAGAGGGAGAAGGAGAGG
GAGAGGGANNCNTGNNNGGNGGNGGNNGNNNGNNGGGNNGNGGGNNGGGG
GGNNGGGNNNNNNGNNNNNNNNTTTTTNNNNNNNNGGNNNGNNGGNNGGG
NNGGGGGGGGGGGNNGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGGNNGG
GGGGGGGGGGGGNNGGNGGNGGGGGGGGGGGGGGGGGGGGGGGGGGNGGG
GGGNGGGNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNGGGG
GNGGGGGGGGGGGNGGGGGGTGGGGGNGGTGGGTTTTTTTTTTNGTTGTG
TGTTTGGGGGTGTTTGGTTTTTTGTTTTTGTTTGTTTGTTGTGGTTTTGT
GTGGGTGTGTGTTTGTTTTTTGGGTTTTTTTTTTGGTTTGTTTTGTTTTT
GTTTTTGTTNTTTTGTGTGTTTTTGTGGTGTTGTTGTGTGGTTTTTTTTT
TTTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTGTGGTTTT
TGTTTTTTTGTTGGTTTTGGTTTGTTTTTGTTTTTGTTTTTTNTTGTGTT
TGGTGGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no493_c02.b1 MSMg01no493_c02.b1 CHROMAT_FILE:
MSMg01no493_c02.b1 PHD_FILE: MSMg01no493_c02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:33 2005
         (688 letters)



>mm_chr1_59400786_59401873
          Length = 1088

 Score = 1261 bits (652), Expect = 0.0
 Identities = 676/684 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaccactaatatgaaaaatcatcctgacttagcaagaaatgtcgcttcaacactg 64
           ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 888 gaattcaccactaatatgacaaatcatcctgacttagcaagaaatgtcacttcaacactg 829

                                                                       
Query: 65  aatatcttgtaccccaggaaaccttgcagcctttgggaaaagtgggtctgttggtcaact 124
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aatatcttgcaccccaggaaaccttgcagcctttgggaaaagtgggtctgttggtcaact 769

                                                                       
Query: 125 ttcgccctgatgtgtctttccagctgacacagaggcctgcccggctaagaaaaacgatgt 184
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 768 ttcgccctgatgtgtctttccagctgacatagaggcctgcccggctaagaaaaacgatgt 709

                                                                       
Query: 185 caccagagctttttattccaccagtattggtggaaatcttcaagctgttattcagggggc 244
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 caccagagttttttattccaccagtattggtggaaatcttcaagctgttattcagggggc 649

                                                                       
Query: 245 caccacagctccatgggtgggagaagtggtcatagcatcctcatctcttctccagcttag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 caccacagctccatgggtgggagaagtggtcatagcatcctcatctcttctccagcttag 589

                                                                       
Query: 305 gaagtagggttctaaaggaggctgccctcggagtggggagaaagtcctagaccccagaca 364
           |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 588 gaagtagggttccaaaggaggctgccctcggagtggggagaaagtcctagatcccagaca 529

                                                                       
Query: 365 aaggcagaccctgttcccttctgcaagcagcaatcgatcaatcaattgatcaattgcctg 424
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 528 aaggcagaccctgttcccttctgcaagcagcaatcgatcaatcaatcgatcaattgcctg 469

                                                                       
Query: 425 tggttctgggcctgctcaccttcagagatgtaggtaacctcaccttttcttttcaccaac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 tggttctgggcctgctcaccttcagagatgtaggtaacctcaccttttcttttcaccaac 409

                                                                       
Query: 485 atttgttaaccccgactaggtggtgtctcttcctgtaggaagccgaaaggtcacacattt 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 atttgttaaccccgactaggtggtgtctcttcctgtaggaagccgaaaggtcacacattt 349

                                                                       
Query: 545 ctggctttagcttcactcccgaaactgcaaacagagactcctctgtagggaggaaaagag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ctggctttagcttcactcccgaaactgcaaacagagactcctctgtagggaggaaaagag 289

                                                                       
Query: 605 aagagcatctatatagtatttcctgaactcttcaatagtacacatgttttgtctgcctgt 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 288 aagagcatctatatagtatttcctgaactcttcaatagtacacatgttttgtctgcctgt 229

                                   
Query: 665 tgtaacatctgatacccaaagaga 688
           ||||||||||||||||||||||||
Sbjct: 228 tgtaacatctgatacccaaagaga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)