CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTATTCTGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTT
CTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCT
ATCTCATTTAGGATAGGTAATGATCCTTTCCCAATCTGTTGGTGGTCTTT
TTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATT
AGGTCCCATTGGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCT
GTTCAGGAATTTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATACGTATGGACCGATTCGGA
TTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATG
CTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTG
ACCAAAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGT
CTACTTGTCTGTCTCTATACCAGTACCATGCAGTTTTTACCACAATTGTT
CTGTAGTAAAGCTTTAGGTCAGGCATGGTGATTCCACCAGAGGTTCTTTT
ATCTTTGAGAGAGTTTTTGCTATCCTAGGTTTTTGTTN

ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTGCTTGAAATGAAATGTTGTTACTTAAGT
TTAGCTGACAGAATGATGATGGGGCTTGAAAGAACAAAGGCAGTAATGAG
CACCTAAAAGAATTGTGTCTATTCAGAGACAAAAGCAGGCTAAATTCTTG
TCCTTCCTCTAAGGCTGGAGGTAATTTTCCTAACCTCTCAGTCCTTGCTG
GTTCCTGTTGAGTAATGTGTACTATTGTGAAGATCAGAGAAGATACATGC
AAAACACCTGGGCAGGTATTGTTTGGCTGTTGCCATGGTAACTGTTGCTC
ATATTCATTCCTTCTTTGCATTGTTCTGATATGTCAAGTTCAACTCACGT
TTATCAACAAGTGATGCTTCATGTTTATTCTGAAATGACAAAACAAGTTT
CAACTGTGGCTCACTCTTATTTTCTGTTGTGTAGAATTTTCTTTTAAATC
AACTCAATAAGGACATCTACAAACCTCTTATAGTAAACTTCTCAGCCCAA
ACTACAGCAGCCCAAACTCAGAATATCATCATGTCGAAACTGGACAAAAG
AAGAAAAGGAGTTTTTGGCCCTCCTTTAAGCAAGAGAATGGTAAGGGTTT
CTTCACACTGTTCTATCTCTAGTATAATCCTGGGCCCATTCATGTCCCCA
CTGTCACAATCAGAACAAGGAAACCTTGGCAAGCTAAAGATTA

Query= MSMg01no493_c10.g1 MSMg01no493_c10.g1 CHROMAT_FILE:
MSMg01no493_c10.g1 PHD_FILE: MSMg01no493_c10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:35 2005
         (527 letters)



>mm_chr1_53580475_53581407
          Length = 933

 Score =  832 bits (430), Expect = 0.0
 Identities = 506/534 (94%), Gaps = 8/534 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcttgaaatgaaatgttgttacttaagtttagctgacagaatgatga-tggggcttgaa 59
           |||||||||||||||||||||| || |||||||||||||||||||||| | |||| ||||
Sbjct: 733 tgcttgaaatgaaatgttgttaattcagtttagctgacagaatgatgact-gggcatgaa 675

                                                                       
Query: 60  agaa---c---aaaggcagtaatgagcacctaaaagaattgtgtctattcagagacaaaa 113
           ||||   |   |||||||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct: 674 agaaaatcatgaaaggcagtaatgatcacctaaaagacttgtgtctatttagagacaaaa 615

                                                                       
Query: 114 gcaggctaaattcttgtccttcctctaaggctggaggtaattttcctaacctctcagtcc 173
           ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 614 gcaagctaaattcttgtccttcctctaaggctggagataattttcctaacctctcagtcc 555

                                                                       
Query: 174 ttgctggttcctgttgagtaatgtgtactattgtgaagatcagagaagatacatgcaaaa 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 554 ttgctggttcctgttgagtaatgtgtactattgtgaagatcagagaagatacatgcaaag 495

                                                                       
Query: 234 cacctgggcaggtattgtttggctgttgccatggtaactgttgctcatattcattccttc 293
            |||||||||||||  |   |||||||||  |||||||||||| ||||||||||||||||
Sbjct: 494 tacctgggcaggtagagacaggctgttgctgtggtaactgttgttcatattcattccttc 435

                                                                       
Query: 294 tttgcattgttctgatatgtcaagttcaactcacgtttatcaacaagtgatgcttcatgt 353
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tttgcattgttctgatatgtcaagttcaactcacgtttatcaacaagtgatgcttcatgt 375

                                                                       
Query: 354 ttattctgaaatgacaaaacaagtttcaactgtggctcactcttattttctgttgtgtag 413
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 374 ttattctgaaatgacaaaacaagtttcaactgtcgctcactcttattttctgttgtgtag 315

                                                                       
Query: 414 aattttcttttaaatcaactcaataaggacatctacaaacctcttatagtaaacttctca 473
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 314 aattttcttttaaatcaactcaataaggacatctacaaacctcttatagttaacttctca 255

                                                                 
Query: 474 gcccaaactacagcagcccaaactcagaatatcatcatgtcgaaactggacaaa 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 gcccaaactacagcagcccaaactcagaatatcatcatgtcgaaactggacaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 933
Length adjustment: 10
Effective length of query: 517
Effective length of database: 923
Effective search space:   477191
Effective search space used:   477191
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)