Query= MSMg01no493_g20.b1 MSMg01no493_g20.b1 CHROMAT_FILE:
MSMg01no493_g20.b1 PHD_FILE: MSMg01no493_g20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:57 2005
(687 letters)
>mm_chr1_128401532_128402622
Length = 1091
Score = 1203 bits (622), Expect = 0.0
Identities = 671/690 (97%), Gaps = 8/690 (1%)
Strand = Plus / Plus
Query: 5 gaattctctaaaatctgaaactttctgagtgtaactctgtgatggggttccaaagtgtaa 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctctaaaatctgaaactttctgagtgtaactctgtgatggggttccaaagtgtaa 262
Query: 65 ggttctgaacttgacttcatttggtgagtcagtctaaacataggcgcagtagaggtacat 124
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 263 ggttctgaacttgacttcatttggtgagtcagtctaaacataggcacagtagaggtatat 322
Query: 125 cataaggactgggggaatagctgactggcaaagtgccttctgtgcggcagaaagacctga 184
||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct: 323 cataaggactgggggaatagctgactggcaaagtgtcttctgtgcggcagaaggacctga 382
Query: 185 gtccctgcccccaaaactgtgtagaaaaccaggtgtggggtcacaggcttgaaatccaag 244
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gtcccagcccccaaaactgtgtagaaaaccaggtgtggggtcacaggcttgaaatccaag 442
Query: 245 acatggacaccagaggatccctcaggcttagtgtcagccagactagcctacctggtgagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 443 acatggacaccagaggatccctcaggcttagtgtcagccagactagcctacttggtgagt 502
Query: 305 tacagaccagtcatagactgcctgaaaacagcaagtggacat--gagaaatgatgtacaa 362
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct: 503 tacagaccagtcatagactgcctcaaaacagcaagtggacatatgagaaatgatgtacaa 562
Query: 363 ggctgtcctctgaactccatatgtacaagtacacacatgaatgtgcacacct-atgcaca 421
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 563 ggctgtcctctgaactccatatgtacaagtacacacatgaatgtgcacac-tcatgcaca 621
Query: 422 ctagatatacatatatacatgcatacac----gcacgcaagtattaaaagtatgtccatc 477
||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 622 ctagatatacatataaacatgcatacacacacgcacgcaagtattaaaagtatgtccatc 681
Query: 478 ttatgcctataaccctgtatttgaaacagacaggatctttgtgtctagactcagatccaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttatgcctataaccctgtatttgaaacagacaggatctttgtgtctagactcagatccaa 741
Query: 538 ctcattttattttagagacatcaatgttccaaactctgaaatagttgtacaaccaaagca 597
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 ctcatcttattttagagacatcaatgttccaaactctgaaatagttgtacaaccaaagca 801
Query: 598 cttgtgatgccaatcatttctgacaagaaaaactcaaactctaaggaccgcagtttcagt 657
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 802 cttgtgatgccaatcatttctgacaagaaatactcaaactctaaggaccgcagtttcagt 861
Query: 658 tcactctctgacacgtctcacgattaaatg 687
||||||||||||||||||||| ||||||||
Sbjct: 862 tcactctctgacacgtctcacaattaaatg 891
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1091
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1081
Effective search space: 731837
Effective search space used: 731837
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_g20.g1 MSMg01no493_g20.g1 CHROMAT_FILE:
MSMg01no493_g20.g1 PHD_FILE: MSMg01no493_g20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:17:57 2005
(609 letters)
>mm_chr1_128465754_128466762
Length = 1009
Score = 1100 bits (569), Expect = 0.0
Identities = 599/609 (98%)
Strand = Plus / Minus
Query: 1 tctctgactcgtctaggtatttagaaatctcctatctcatccaaaaataaatcaaaagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 tctctgactcgtctaggtatttagaaatctcctatctcatccaaaaataaatcaaaagga 750
Query: 61 aactttttagttctgtttaagccactcaggggactggggggcctacatgtaaggaaccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 749 aactttttagttctgtttaagccactcaggggactggggggcctacatgtaaggaaccat 690
Query: 121 tgatccgagtgcacagtcgggggccttgtgctacctccctgtttggggttttaaggctga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tgatccgagtgcacagtcgggggccttgtgctacctccctgtttggggttttaaggctga 630
Query: 181 accatctcccagcctgacttttgcttcttttgaagattgttttcttttcattggaattga 240
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 accatgtcccagcctgacttttgcttcttttgaagattgttttcttttcattggaattga 570
Query: 241 cttctacttctttcatacttcagactggcctgtgcttgggaacttaacgggagatgttgg 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 569 cttctacttctttcatacttcagactggcctgtgcttgggaacttaacgggagaggttgg 510
Query: 301 gagcagggctgatgctccagaaagaagcaacaggaggtctgtggaatgaccctgttactt 360
|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 509 gagcagggctgatgctgcagaaagaagcaacaggaagtctgtggaatgaccctgttactt 450
Query: 361 tcacactggtccagcaggccagccggtgatgttccttaactagagactgttgtcttttct 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 449 tcacactggtccagcaggccagccagtgatgttccttaactagagactgttgtcttttct 390
Query: 421 gctctgatctcttttctgagcaccaagcatcccttatgctgtttgccgtggagggattgc 480
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 389 gctctgatctcttttctgagcaccaagaatcccttatgctgtttgccgtggagggattgc 330
Query: 481 tgtttcagagctatcctttcaaaaccttggaatctgcacgggagctccaccttttcgcgt 540
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgtttcagagataccctttcaaaaccttggaatctgcacgggagctccaccttttcgcgt 270
Query: 541 gtcattctttttcctaatgttttgttctgtttgctgtggtggaggttgttttgagatatc 600
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 269 gtcattctttttcctaatgttttgttctgtttgctgtggtggaggttgttatgagatatt 210
Query: 601 gtttccatt 609
|||||||||
Sbjct: 209 gtttccatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
