Query= MSMg01no493_l11.b1 MSMg01no493_l11.b1 CHROMAT_FILE:
MSMg01no493_l11.b1 PHD_FILE: MSMg01no493_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:22 2005
(689 letters)
>mm_chr1_131458452_131459541
Length = 1090
Score = 1234 bits (638), Expect = 0.0
Identities = 674/686 (98%), Gaps = 1/686 (0%)
Strand = Plus / Plus
Query: 4 ggaattctattatctttcaaaatacagctcctggatcaagccattgcacacttgtctgct 63
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 204 ggaattctattatcacacaaaatacagctcctgaatcaagccattgcacacttgtctgct 263
Query: 64 caggttacagagttgcagatggtttgatttgcaccatacacgacacccgtggaacaagac 123
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 264 caggttacagagttgcagatggtttgatttgcaccatacaggacacccgtggaacaagac 323
Query: 124 agcaaacaaaaaagagttactttaaatactttaaataaagtatatactttttt-aagtga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 agcaaacaaaaaagagttactttaaatactttaaataaagtatatactttttttaagtga 383
Query: 183 gaaatcattctcgtgaacattgaccattatttggtaagtaagcattaatagtgaaataat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gaaatcattctcgtgaacattgaccattatttggtaagtaagcattaatagtgaaataat 443
Query: 243 aagaagaactgtgacataatcctgatgtgctagaatcgatccctagtattttctatctgt 302
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aagaagaagtgtgacataatcctgatgtgctagaatcgatccctagtattttctatctgt 503
Query: 303 ataactattcttggtgaatttttggccatttcctctaagtgtttataaaattgaattcag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ataactattcttggtgaatttttggccatttcctctaagtgtttataaaattgaattcag 563
Query: 363 ttctttcctccatacatttagtattttttcctcttttcaaattctgagaattattgtaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 ttctttcctccatacatttagtattttttcctcttttcaaattctgagaattattttaaa 623
Query: 423 cccagggacccgataattcaccgggtccaagttgttactctctttgtgcctgccctcatc 482
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cccagggccccgataattcaccgggtccaagttgttactctctttgtgcctgccctcatc 683
Query: 483 acagtaaaccaaggaatatttgaatctctttctttgaaaaatcctcaaatacctcctttt 542
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 684 acagtaaaccaaggaatatttgaatctctttctttaaaaaatcctcaaatacctcctttt 743
Query: 543 tacagttgcaaggcatagttcactttctttgtccttctctcctaacacccacagctcatg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 tacagttgcaaggcatagttcactttctttgtccttctctcctaacacccacagctcatg 803
Query: 603 cctcctcccatttccgagagtgctcccagctccttcttccattctttacaagcctctgct 662
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 cctcctcccatttctgagagtgctcccagctccttcttccattctttacaagcctctgct 863
Query: 663 aagagatattctattttcctgcaata 688
|||||||| |||||||||||||||||
Sbjct: 864 aagagatactctattttcctgcaata 889
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1090
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1080
Effective search space: 733320
Effective search space used: 733320
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_l11.g1 MSMg01no493_l11.g1 CHROMAT_FILE:
MSMg01no493_l11.g1 PHD_FILE: MSMg01no493_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:22 2005
(595 letters)
>mm_chr1_131611174_131612168
Length = 995
Score = 1116 bits (577), Expect = 0.0
Identities = 593/603 (98%), Gaps = 8/603 (1%)
Strand = Plus / Minus
Query: 1 agtcatgttttactgaggatcaaatgcaaccaagttagaaatggccatcaaaatagaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 agtcatgttttactgaggatcaaatgcaaccaagttagaaatggccatcaaaatagaata 887
Query: 61 ttcccattgttgtcaaaaatggaaattcatgaaatgttatttagaattaaaaagaattcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ttcccattgttgtcaaaaatggaaattcatgaaatgttatttagaattaaaaagaattcc 827
Query: 121 tctatatgtgtctctatccataa--------atatatatatatcattactattcaataag 172
||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 826 tctatatgtgtctctatccataaatatatatatatatatatatcattactattcaataag 767
Query: 173 atgaatcacaaacacttaatatataacaataaaatactctacctacatcaaattcaaaac 232
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 766 atgaatcacaaacacttaatatataacaataaaatactctacctacataaaattcaaaac 707
Query: 233 cagataaaatagcataaaggggccggagtcaaaacataggttcctttggatgctgtgcaa 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cagataaaatagcataaaggggccggagtcaaaacataggttcctttggatgctgtgcaa 647
Query: 293 gagcaatggagcaaaaggattgtgggagctctttaaaaaggaatgtgacaaagtcatttt 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gagcaatggagcaaaaggattgtgggagctctttaaaaaggaatgtgacaaagtcatttt 587
Query: 353 taatattgagtttctgacaaaccaagagataactctgtaaatgtgaagcttgctctaaaa 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 taatattgagtttctgacaaaccaagagataactctgtaaatgtgaagcttgctctaaaa 527
Query: 413 ctttttaaacattcctattagtcttggattaatataataaaatgatgagtgatttcaata 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctttttaaacattcctattagtcttggattaatataataaaatgatgagtgatttcaata 467
Query: 473 gtaccaaatgtatatattgctatggtgaatgggttaaacagccttgagtgtatataatga 532
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 466 gtaccaaatgtatatattgctatggtgaatgggttaaacagccttgagtatatataatga 407
Query: 533 aatgatgaatgggataaacaagatgaattaactttctgagcatctgtatcatacagaaat 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 aatgatgaatgggataaacaagatgaattaactttctgagcatctgtatcatacagaaat 347
Query: 593 tat 595
|||
Sbjct: 346 tat 344
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
