Query= MSMg01no493_m10.b1 MSMg01no493_m10.b1 CHROMAT_FILE:
MSMg01no493_m10.b1 PHD_FILE: MSMg01no493_m10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:26 2005
(621 letters)
>mm_chr1_63461430_63462449
Length = 1020
Score = 1162 bits (601), Expect = 0.0
Identities = 616/621 (99%), Gaps = 1/621 (0%)
Strand = Plus / Minus
Query: 1 ctataggaggataccctgtctcaagagggagaggggtgggtggaccaagcaaaaggagaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 ctataggaggataccctgtctcaagagggagaggggtgggtggaccaagcaaaaggagaa 761
Query: 61 gacaagacaagacttttgcacacggattgtgctgttggggggcaattatggtaatgttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760 gacaagacaagacttttgcacacggattgtgctgttggggggcaattatggtaatgttgc 701
Query: 121 tgtatcttacaccaccatgttttagggtagctcaactttgccaattgtctcttgaaaaaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 700 tgtatcttacaccaccatgttttagggtagctcaactttgccaattgtctcttg-aaaaa 642
Query: 181 aaatattctgttttgatttaagtccctttatctgaggtactaagttctaaagaaactcac 240
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 641 aaatattctgttttgatttaagtccctttgtctgaggtactaagttctaaagaaactcac 582
Query: 241 catgactgattgagaggttatttgctatactttaatgctgcagacaaggaaatagttaac 300
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct: 581 catgactgattgagaggttatttgctatactttaatactgcagacaaagaaatagttaac 522
Query: 301 cagaatccgagtgttcttattacctgtcaccacaagcaccaatgagcagagacagaaatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cagaatccgagtgttcttattacctgtcaccacaagcaccaatgagcagagacagaaatg 462
Query: 361 gactcttcaagctgtgttttattcagagagccacccatctggaaggacagagatctgaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 gactcttcaagctgtgttttattcagagagccacccatctggaaggacagagatctgaca 402
Query: 421 ccccaaatctgctctcctctctcctctccagctggcacattgagtagagagtggagatca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ccccaaatctgctctcctctctcctctccagctggcacattgagtagagagtggagatca 342
Query: 481 aagcaatcaatcactccagcactttgtccctctggcaggcagtccaccttgtctggagct 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aagcaatcaatcactccagcactttgtccctctggcaggcagtccaccttgtctggagct 282
Query: 541 cctggtgttagctgggtttctagtcttgcactttcctttataattagagttctttgtgta 600
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 281 cctggtgttagctgggtttctcgtcttgcactttcctttataattagagttctttgtgta 222
Query: 601 gcagaagttcacattttccca 621
|||||||||||||||||||||
Sbjct: 221 gcagaagttcacattttccca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1020
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1010
Effective search space: 617110
Effective search space used: 617110
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no493_m10.g1 MSMg01no493_m10.g1 CHROMAT_FILE:
MSMg01no493_m10.g1 PHD_FILE: MSMg01no493_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:26 2005
(477 letters)
>mm_chr1_63308086_63308962
Length = 877
Score = 868 bits (449), Expect = 0.0
Identities = 468/477 (98%), Gaps = 6/477 (1%)
Strand = Plus / Plus
Query: 1 ttcttagccctagtctcactttttaaaaaaaattatacccttttgttcatttttcaaaat 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcttagccctagtctcacttttttaaaaaaattatacccttttgttcatttttcaaaat 260
Query: 61 ttctccaaaaatctactccaaacaaacgaaaacaacttataaatcctaaaaagttcaaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttctccaaaaatctactccaaacaaacgaaaacaacttataaatcctaaaaagttcaaaa 320
Query: 121 caaaacaaatggacaaacaaaaataccccagaaagcatacatttgtaacagctttcccca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 caaaacaaatggacaaacaaaaataccccagaaagcatacatttgtaacagctttcccca 380
Query: 181 aattcacatttgagtttttgtagtgactgtttaaatgttttctagcaagaaaagggacat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattcacatttgagtttttgtagtgactgtttaaatgttttctagcaagaaaagggacat 440
Query: 241 atgatttccatgtaaaataaatcagtacgggttttctgtttgtttttgttttgagacagg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgatttccatgtaaaataaatcagtacgggttttctgtttgtttttgttttgagacagg 500
Query: 301 gtttctctgcatagccatgactgtcctggaactcactctgtagaccaggctcaaactcag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtttctctgcatagccatgactgtcctggaactcactctgtagaccaggctcaaactcag 560
Query: 361 aaatccacctgcctctgcctcccaaatggtgggattaaaggtgcgcgccaacactgcagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaatccacctgcctctgcctcccaaatggtgggattaaaggtgcgcgccaacactgcagg 620
Query: 421 gcattcagaacntnttttttttttttttttttttttttttggggaggtttggaagct 477
|||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct: 621 gcattcagtac-----ttttttttttttttttttttttttggt-aggtttggaagct 671
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 877
Length adjustment: 10
Effective length of query: 467
Effective length of database: 867
Effective search space: 404889
Effective search space used: 404889
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
