Query= MSMg01no493_n06.b1 MSMg01no493_n06.b1 CHROMAT_FILE:
MSMg01no493_n06.b1 PHD_FILE: MSMg01no493_n06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:30 2005
(709 letters)
>mm_chr1_150667467_150668576
Length = 1110
Score = 1006 bits (520), Expect = 0.0
Identities = 551/564 (97%), Gaps = 8/564 (1%)
Strand = Plus / Minus
Query: 5 gaattcatcacatttaggagcagataccaaatacacattctgctcagtttcttttctccc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaattcatcacatttaggagcagataccaaatacacattctgctcagtttcttttctccc 504
Query: 65 tttgtacatcctgagacccaacagggaacagagccacccaaatgaacagttttgcctgcc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tttgtacatcctgagacccaacagggaacagagccacccaaatgaacagttttgcctgcc 444
Query: 125 taaatcaaactaattgaaatattcccactaatcatgcctagatgccttcttcctaggcaa 184
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 taagtcaaactaattgaaatattcccactaatcatgcctagatgccttcttcctaggcaa 384
Query: 185 ttctaaagttctactgttttcccaatt-gacactacccatcatgcatattatatagttgt 243
||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||
Sbjct: 383 ttctaaagttctactgttttcccaattag-cactacccatcatgcatattctatagttgt 325
Query: 244 tattttt-ttgtctgtttttaggattacttaccaatgttctttgtttgcttacaagtttt 302
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tatttttcttgtctgtttttaggattacttaccaatgttctttgtttgcttacaagtttt 265
Query: 303 gtaagatgtttgtccacagatattttcatgtggatatcactgaatagcagggtcattctc 362
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 264 gtaagatgtttgtccacagatattttcaggtggatatcactgaatagcagggtcattctc 205
Query: 363 atataataatatatatataaacaaactttaaaaaaataaaacagattaggacatttctca 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 atataataatatatatataaacaaactttaaaaaaataaaacagattaggacatttctca 145
Query: 423 acctacagtagtgaagttcctttttgcagagagtgggactctggaggtctcacttctttt 482
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct: 144 acctacagtagtgaagttcctttttgcagagagtgggactgtggaggtctcaattctttt 85
Query: 483 tattttattttat-----gtttaaaatattttctttatttacatttcaaatattattccc 537
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tattttattttattttatgtttaaaatattttctttatttacatttcaaatattattccc 25
Query: 538 tttcctaggttcccctctgaaaat 561
||||||||||||||||||||||||
Sbjct: 24 tttcctaggttcccctctgaaaat 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 709
Length of database: 1110
Length adjustment: 10
Effective length of query: 699
Effective length of database: 1100
Effective search space: 768900
Effective search space used: 768900
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no493_n06.g1 MSMg01no493_n06.g1 CHROMAT_FILE:
MSMg01no493_n06.g1 PHD_FILE: MSMg01no493_n06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:18:30 2005
(607 letters)
>mm_chr1_150552291_150553297
Length = 1007
Score = 1135 bits (587), Expect = 0.0
Identities = 603/609 (99%), Gaps = 2/609 (0%)
Strand = Plus / Plus
Query: 1 atattgcaagaattttttgagtatttttgcatctctatttataagggaaattgctgtatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atattgcaagaattttttgagtatttttgcatctctatttataagggaaattgctgtatc 260
Query: 61 attctctttctttgtgtggcctttatgtaactctggccttggaaaacaaattgagcaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attctctttctttgtgtggcctttatgtaactctggccttggaaaacaaattgagcaaca 320
Query: 121 ttgtagcttgactatattctagttgatggctccatactcagaaatgtgtagatagcacac 180
||||| ||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 321 ttgtaacttgactatattctagttgatggctccatactcagaaatctgtagagagcacac 380
Query: 181 attggaactattgaattattgctttatttttaaaagacagaaatatgatttatcagctca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attggaactattgaattattgctttatttttaaaagacagaaatatgatttatcagctca 440
Query: 241 gagtaaaagacttatattattttacacagaaaatgtgtataaggttttttttcataattt 300
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 441 gagtaaaagacttatattattttacacagaaaatgtgtataagtttttttttcataattt 500
Query: 301 ctgttggttaacggagaaagaatgtgcatatgcatgtgtatgtaatttttgtgtgtgtgt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgttggttaacggagaaagaatgtgcatatgcatgtgtatgtaatttttgtgtgtgtgt 560
Query: 361 gtgt--atgtgtgtgtgtgtgtgtacacatacacatgtacacacatttgtgtgtgtttat 418
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtgtgtatgtgtgtgtgtgtgtgtacacatacacatgtacacacatttgtgtgtgtttat 620
Query: 419 gtgcaggaaaatgtttatgtgcaagcaaatagtggccagaactcaacaactaatatcttc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgcaggaaaatgtttatgtgcaagcaaatagtggccagaactcaacaactaatatcttc 680
Query: 479 tattgctcccaactttgtactcagagacagaatctctctgttaacctggagttccctgat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tattgctcccaactttgtactcagagacagaatctctctgttaacctggagttccctgat 740
Query: 539 tgactaaaatggtagtccatggaaatctaaggacatatatgtctttttccttccagcatc 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgactaaaatggtagtccatggaaatctaaggacatatatgtctttttccttccagcatc 800
Query: 599 aaaattgcc 607
|||||||||
Sbjct: 801 aaaattgcc 809
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
