BAC Information

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BAC

Clone NameMSMg01-494E06
Chromosome1 (Build37)
Map Location 138,739,145 - 138,739,444
singlet/doubletsinglet
Overlap genenone
Upstream geneTnnt2, LOC100042477, Pkp1, 9830123M21Rik, Tmem9, Ascl5, Cacna1s, Kif21b, 2310006M14Rik, 5730559C18Rik, LOC100042513, Gpr25, Camsap1l1, 9230116N13Rik, Ddx59, Kif14, Zfp281, LOC667686, EG623818
Downstream geneNr5a2, Rnu7-ps3, LOC100042567
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494E06.T7 (MSMg01no494_e06.b1)MSMg01-494E06.TJ (MSMg01no494_e06.g1)
ACCAG571587AG571588
length731739
length of high quality
(start - end)
521 (37 - 557)466 (66 - 531)
definitionCHROMAT_FILE: MSMg01no494_e06.b1 PHD_FILE: MSMg01no494_e06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:04 2005CHROMAT_FILE: MSMg01no494_e06.g1 PHD_FILE: MSMg01no494_e06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCACAT
TATTTATAAAAATAAAGTTTGCAATAAACATATACCTTGAGGAGTGGCTG
GATATATTGCTCAATGATCATGAACACTTACTTTTCTGACGGATTAGGAT
TCTGTTAAACCTATTTTGGCAGCACACAGCATCCTGTAACTCTGTTCCAG
AGCAGTTAATGCATTTTTTATTGGACACTATATGTATTTACATTTCTTTT
TTTTTTTAAGTTACCAGGTGGACATATCAATATTTATTGAAATACTGGAA
AAAAAATCTATTTCATTGAGAAATTCATGGCAAGAACCGACATGACAATG
TGTGTTTCACTGATACAGTAAGAAAACGTCAACAAGTAACCAACTTCACA
CTCGGAACACCGCATGGATGCAAGTCCAAGAGAGATGCAGAGGAGCCACA
GTCCAAAGACTCGGACGTCACAGACTGTCTCTTTACAGAGACCAGCTACG
GGAAACCCGGCTCAGGTGAAGACCCTTCGTCTTTAGTCTGCCTTTATTAG
GAAATCTCAGAATCAATGAGGCAGCTGGCTAAGTTGCAAACTGGCTACCT
ACTCAAATATTATCCTCTATCCCGTTTTCCCCTCCGGAACCCCCTTTGCC
ATCCCCCATCCTGCTGCTTTTATGAGGGTGTTTCTCCTCCCACCCACCCA
CTCACACCTTACCACCGTGGCATTCCCCTAN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXAAAGTACAAAAGAACATTGTAGAAGTTTTGGAAAA
GTTAATGGGTCTTTTAAATCAAGCCCCCTTTAAAGCTCAAGGAAGATCTG
TGGTCGCTCAGGCCTTTAATCCCAGTACTCAGGAGGCAGAAGCAGACAGG
TTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCC
AGGGCTATACAGAGAAACCCTGTCTCAAAAAACCAAAAATAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAACAAAGCTCAAGGAACAT
TATAAAGAAGGGACAGAAAACCTAGGAGTCATAGGCAATGAAGTACTACA
AGAAATATTGCTATTCTGAGACAACAATTGCATATATGAAGTCAAATTGG
TTGTAATAGAATTCATAGGTTTGTATTATCTTAACCCAGAAATAATCCCC
TGCCTGGAGGAGAAAGGTGGTTCTGAAACCCTCTTCCACATAAGCCTGAG
ATGTTATTGGTAATTAAAAGCTGTTGGGGATGGAGAATGAGCATACTTTA
AGGCTTTTACACATTTTAAGTAGGCCACATTCCAGAGATAGCCTCATATC
TAAGAGAATGTGGAAAACACATGCGAGATTTGATGGGTTCCTATTTATTT
ACTATTTTATATTTACTTTTTGAGATTATATGATTATGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_e06.b1 MSMg01no494_e06.b1 CHROMAT_FILE:
MSMg01no494_e06.b1 PHD_FILE: MSMg01no494_e06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:04 2005
         (521 letters)



>mm_chr1_138738724_138739644
          Length = 921

 Score =  557 bits (288), Expect = e-163
 Identities = 297/300 (99%)
 Strand = Plus / Plus

                                                                       
Query: 222 aagttaccaggtggacatatcaatatttattgaaatactggaaaaaaaatctatttcatt 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 422 aagttaccaggtggacatatcaatatttattgaaatactggaaaaaaaatccatttcatt 481

                                                                       
Query: 282 gagaaattcatggcaagaaccgacatgacaatgtgtgtttcactgatacagtaagaaaac 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 gagaaattcatggcaagaaccgacatgacaatgtgtgtttcactgatacagtaagaaaac 541

                                                                       
Query: 342 gtcaacaagtaaccaacttcacactcggaacaccgcatggatgcaagtccaagagagatg 401
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 542 gtcaacaagtaaccaacttcacactcggaacaccgcatggatacaagtccaagagagatg 601

                                                                       
Query: 402 cagaggagccacagtccaaagactcggacgtcacagactgtctctttacagagaccagct 461
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 602 cagaggagccacagtccaaagactcggacgtcacagactgtctctctacagagaccagct 661

                                                                       
Query: 462 acgggaaacccggctcaggtgaagacccttcgtctttagtctgcctttattaggaaatct 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 acgggaaacccggctcaggtgaagacccttcgtctttagtctgcctttattaggaaatct 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space:   465521
Effective search space used:   465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)