Query= MSMg01no494_e18.b1 MSMg01no494_e18.b1 CHROMAT_FILE:
MSMg01no494_e18.b1 PHD_FILE: MSMg01no494_e18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:06 2005
(609 letters)
>mm_chr1_82695544_82696552
Length = 1009
Score = 1085 bits (561), Expect = 0.0
Identities = 589/609 (96%), Gaps = 17/609 (2%)
Strand = Plus / Plus
Query: 1 caccggaacactcaatactttgattctctttctcaccctaggcctttactacctacctaa 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 caccggaacactcaatactttggttctctttctcaccctaggcctttactacctacctaa 260
Query: 61 cagtgacccacccacaacattccccagccagcagcctcactcttctctctcctatactga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagtgacccacccacaacattccccagccagcagcctcactcttctctctcctatactga 320
Query: 121 agccacttactctcatgaataacaccagttgaggatgtaaaacacactcatacttataaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agccacttactctcatgaataacaccagttgaggatgtaaaacacactcatacttataaa 380
Query: 181 ataaaatcaacaagtcattttttagttaaacacacacacacatgggaaagaagaggggag 240
||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 ataaaatcaacaagtca-----------------cacacacatgggaaagaagaggggag 423
Query: 241 attgtttccaatccatatgacagctttcatccagaaatttcaaagcacagtttcttgaag 300
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 424 attgtttccaatccatatgacagctttcatccaggaatttcaaagcacagtttcttgaag 483
Query: 301 gttttctgaaaggactaataatacctggtactacactgtgacatctgggctctcttttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 gttttctgaaaggactaataatacctggtactacactgtgacatctgggctctcttttca 543
Query: 361 gacctcttgcaggctgatccccctttgactcggtatcacggatgtgggaaagattcagcc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gacctcttgcaggctgatccccctttgactcggtatcacggatgtgggaaagattcagcc 603
Query: 421 aggagactaaacaggactacaacttcctctgtgtctaactgggcaacaattccaagccca 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aggagactaaacaggattacaacttcctctgtgtctaactgggcaacaattccaagccca 663
Query: 481 catcactaccctgaagtttagcttctctctgctctgttgaattatctgtaaataaataat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 catcactaccctgaagtttagcttctctctgctctgttgaattatctgtaaataaataat 723
Query: 541 gtcactctaaagtccaccaaataggaactgtggcttacatacacacaacactttagatct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gtcactctaaagtccaccaaataggaactgtggcttacatacacacaacactttagatct 783
Query: 601 taaaatagc 609
|||||||||
Sbjct: 784 taaaatagc 792
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no494_e18.g1 MSMg01no494_e18.g1 CHROMAT_FILE:
MSMg01no494_e18.g1 PHD_FILE: MSMg01no494_e18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:07 2005
(468 letters)
>mm_chr1_82852364_82853231
Length = 868
Score = 578 bits (299), Expect = e-169
Identities = 308/313 (98%), Gaps = 4/313 (1%)
Strand = Plus / Minus
Query: 1 cctccccaatgcctacttcctctcacttgctactttgcctctccttattccagtaaagct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 cctccccaatgcctacttcctctcacttgctactttgcctctccttattccagtaaagct 254
Query: 61 ttgacttttctatcttccttgtgaacactcttaaagaaaaaaaggaaatgtctgggccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ttgacttttctatcttccttgtgaacactcttaaagaaaaaaaggaaatgtctgggccag 194
Query: 121 caagatacaacagtgcataaaggtgcttgcggctgagcctgataacatgagttcaatccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 caagatacaacagtgcataaaggtgcttgcggctgagcctgataacatgagttcaatccc 134
Query: 181 tagaacctgacacacggtatatattcacagcagagaactgagtactgcacattgtcctct 240
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 133 tagaacctgacacacggtatatattcacagcagagaactgagcactgcacattgtcctct 74
Query: 241 gacctctacatgtgcgacaggcagatgcacccacccacaatagt----aaaaaaaaaaaa 296
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 73 gacctctacatgtgcgacaggcagatgcacccacccacaatagtaaaaaaaaaaaaaaaa 14
Query: 297 ttaaaactcaatg 309
|||||||||||||
Sbjct: 13 ttaaaactcaatg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 868
Length adjustment: 10
Effective length of query: 458
Effective length of database: 858
Effective search space: 392964
Effective search space used: 392964
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
