BAC Information

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BAC

Clone NameMSMg01-494E22
Chromosome1 (Build37)
Map Location 105,696,259 - 105,696,386
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC383546, LOC100041134, Cdh20
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-494E22.T7 (MSMg01no494_e22.b1)MSMg01-494E22.TJ (MSMg01no494_e22.g1)
ACCAG571619AG571620
length720768
length of high quality
(start - end)
504 (106 - 609)138 (64 - 201)
definitionCHROMAT_FILE: MSMg01no494_e22.b1 PHD_FILE: MSMg01no494_e22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:07 2005CHROMAT_FILE: MSMg01no494_e22.g1 PHD_FILE: MSMg01no494_e22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 20:19:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTAA
GCTTGCTAAACAGCTTCAATGATGTAGCTGGATATAAAATTAACTCAACC
AAGTCAATGGCCTTTCTGTACACAAAGTATAAACAGTCTGAGAAAGAAAT
TAGAGAAACAACACCCTTCTCAATAGTCACAAATAATATAAAATACCTTG
GCGTGACTCTAACTAAGGAAGTGAAAGATCTGTATGATAAGAACTTCAAG
TCTCTAAAGAATGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCC
ATGCTCATGGAATGGCAGGATCAACACTGTAAAAATGGCTATCTTGCCAA
AAGCAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTC
TTCAACGAATTTGAAAGGGCAATCGGCAGAATCATCTGGAATAACAAAAA
ACCGAGGATAGGAAAAACTCTTCTCAAGGATAAAAGAACCTCTGGTGGAA
TCACTATGCCAGACCTAAAACTGTACTACAGAGCAATTGTGATCAAAACT
GCATGGGTTTGGTATAGTGACAGACAAGTAGACCAATGGAACAGAATTTA
AGACCCAGATATGAGCCCACACACCTATGGTCACTTGATCTTTGACAAGG
GAGCTAAAACCATCCAGTGGTAAAAAGACAGCATTTTCAACAATTGGTGC
TGGCGCAACTGGCAGTTATC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXCACAGGTTAAGTAATTTGAAATCCAATTGCCTTAGGTAA
TGAGTGGTAATACAAGACTTAGATCAGAGGACTTTAGAAATTATAATCTG
TTTTGTATTTTCAGCTCCCTATAAATACAGAGGGCCACCAGAGTCAGAAA
TTTAGATAGTGATATGGGTATGGGTATCGTGTGTGTGTTTGTGTGTGTGT
GTGTGTGTCTGTACATACATATACATATACATATACATATACATATACAT
ATACATATTCTTATACATATACATATACATATACATATACATATACATAT
ACATACACATACACATACACATACACATACACATACACATACACATACAC
ATATATTACATATACATATGCATACACATATGCGTATACATACAAACATA
TCTGTGCGCATATATGTGTGTGCATATATATATATGTGTGTGTGTGTGTG
TGTGTGTTTGTGCCTCTGTTTTTTCTCTTTGCTCCTTTTTTGTTTCTCTT
CTTTTTCTGCTTGACTTGTACTTACGTCTTTTTGTTTTTTTTTTTCTCCC
CCCTTGCCTTGTTTTCCATTTGTCAAATTATGTTTCCTTTTCTCCCGTTT
TCGTTTCTTGCCCTTCTTTATATACTTGTTTTTTCCTATATTGGCCCTTC
TCCTTTTTTACTCTTTTTTTTTTCCTTCTTCTCTTTTCTTGTGTTTTATG
CGGTATTTTTCTATGATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no494_e22.g1 MSMg01no494_e22.g1 CHROMAT_FILE:
MSMg01no494_e22.g1 PHD_FILE: MSMg01no494_e22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 20:19:07 2005
         (138 letters)



>mm_chr1_105696050_105696587
          Length = 538

 Score =  232 bits (120), Expect = 6e-66
 Identities = 126/128 (98%)
 Strand = Plus / Plus

                                                                       
Query: 10  taatttgaaatccaattgccttaggtaatgagtggtaatacaagacttagatcagaggac 69
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 taatttgaaatccaattgccttaggtaatgagtggtaatacaagacttagatcagaggac 269

                                                                       
Query: 70  tttagaaattataatctgttttgtattttcagctccctataaatacagagggccaccaga 129
           | |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 270 tctagaaattataatctgttttgtattttcagctccctataaatacagagagccaccaga 329

                   
Query: 130 gtcagaaa 137
           ||||||||
Sbjct: 330 gtcagaaa 337


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)